Lates calcarifer (barramundi perch): 108886631
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Entry
108886631 CDS
T04895
Name
(RefSeq) platelet-derived growth factor D isoform X1
KO
K05450
platelet derived growth factor C/D
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04020
Calcium signaling pathway
lcf04510
Focal adhesion
lcf04540
Gap junction
lcf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108886631
04020 Calcium signaling pathway
108886631
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108886631
04540 Gap junction
108886631
09142 Cell motility
04810 Regulation of actin cytoskeleton
108886631
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
lcf04052
]
108886631
Cytokines and neuropeptides [BR:
lcf04052
]
Cytokines
Growth factors (RTK binding)
108886631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUB
PDGF
Motif
Other DBs
NCBI-GeneID:
108886631
NCBI-ProteinID:
XP_018537129
UniProt:
A0A4W6FA96
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Position
LG21:complement(8761360..8809501)
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AA seq
377 aa
AA seq
DB search
MSGPVVFQMWIVLLLGTITEIGMAQVSTAKVMRSNIRRDDSNRLTTDLYRKEENITVTPV
GGVIHSPRYPNAYPRNLLLSWKLLSPPGSRIHLEFDGHFGLEEAENGVCRYDFVEVEDQS
ETSTIIWGRWCGQKAPPSLNSKTNMLRVTFKSDDYFVAKPGFKVYYSLLYESSLPAANTN
WEAVTMPMSDSGGGQMSVPVTEVPFSLEDLDRTIAAFDTIEQLLKSLNPETWRQDLDSIY
TQTHIHYRSRAYHLASRHNKVDLNRLHDDVKRYSCTPRNYSVNLREELRATNAVFFPRCL
LVKRCGGNCGCGTNNWNNGCTCQASKTTLKLHEVLKYTPEVTLHLRHRRPQVRWVIDEIF
LTHHETCECACPSQPPR
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaccggtggttttccagatgtggatagttttattgctggggacaataaccgag
atcgggatggctcaggtctccacagccaaggtgatgaggagcaacatcaggagagacgac
agcaatcgcctcaccacagacttgtaccgcaaagaggaaaacatcacggtaactccagtg
ggtggagtcatccacagtccacgctaccctaatgcttacccccgcaacctgctgttgtca
tggaaactgctgtcaccgccagggagccgcattcacctggagtttgacggacactttggc
ctggaggaggctgagaatggagtgtgcaggtatgactttgttgaagtggaggaccaatca
gagacaagcactataatttggggtcgctggtgtgggcagaaagctccacctagtctcaac
tccaaaaccaacatgctcagagtcaccttcaagtctgatgattactttgttgcaaagcca
ggattcaaagtctactactcactgctgtatgaatcttctctacctgcagccaacaccaac
tgggaagctgtcactatgcccatgtcggacagtggtggagggcagatgtctgtcccagtc
acagaggttcctttctcactggaggatctggaccgaaccatagctgcctttgacactata
gagcagcttctcaaatccctgaacccagaaacctggagacaggacctggatagcatctac
actcaaacacacatacattatagatccagggcctatcatctggccagcagacataataaa
gttgatctgaaccgtctccatgacgacgtcaagcgatacagctgtaccccacgcaactac
tctgtaaacctgcgcgaagagctgagggccaccaacgccgtcttcttcccacgatgtctg
ctggtcaaacgctgcgggggcaactgcggctgtggaactaataactggaacaatggttgc
acctgtcaggcctccaagacgacgctcaaactacacgaggtgctgaagtacaccccagag
gtcactctgcatctgcgccaccggaggccacaggtgcgctgggttatagatgagatcttc
ctcacacaccatgaaacgtgcgagtgtgcatgcccctcccagccccctcgctga
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