Lates calcarifer (barramundi perch): 108886677
Help
Entry
108886677 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: thyroid receptor-interacting protein 11
KO
K23368
thyroid receptor-interacting protein 11
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108886677
Membrane trafficking [BR:
lcf04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
108886677
Retrieval pathways
108886677
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GRAB
CCDC39
Taxilin
ODF2_C
At4g38062_C
Mod_r
Motif
Other DBs
NCBI-GeneID:
108886677
NCBI-ProteinID:
XP_050933916
UniProt:
A0AAJ8BJ98
LinkDB
All DBs
Position
LG19:20006898..20024706
Genome browser
AA seq
1985 aa
AA seq
DB search
MSSWLGGLGSGLGQSLGQVSGSLSSFTGQISNFTKDMLLEGVEEVGDAATELQVSNSRLA
EVEASFSTQKSEYDRLKKLHAELEEKLEASEIQIKRQTAEYRTLLQQKDVEISHLKARQS
ALHEEVQKLQQSAQSASASPALLPVTTTSSTTTSSASSYLSRPSGSHQGFHGDDMDLSDV
IWSQQEINRLSTEVMRLEAEVAHWRRMSQASTAAGAGNGDQGETLKLQRTIKELREEMSR
EVDEHQHELAALQDAQRQKLADITRRHREELAEYEERIEELEEQIQSGGQTSPSSDASKL
PELQKTIRSLQEAAEQREKQLAELSASLEEAQGKQASLQLEKDEAQEENAGLLQNYMRLQ
ASVAELQTRVQEQEGKALQKAQLDHEIQVLRQNLTAAEKEIERLKNQTETEPEEEVEHAD
ILELNTIIGGLRQEKEVLEQEKLNLQERLKVAEEQINSNNAADSGESESLEDLRVELERR
EKALRATEEERETLMSELEELDRQNQEATQHMISVKEQLSAQLKEAEAELTRLTAELNTT
KDQKRTLEQEVETQKEKTSQSAFTLNELHMGKQQLERTVKELKDKLGHAQEQSREARREI
TELKKSLQEKEELFSAARAELDQAGERGAEARGTKEELAGKERELSDLRRELDEMRGSQE
KVMSADYELKMENRRLKAESEQALGKVEELTKQMKESQAAVNRTVREKDTRIEALKLEKN
QLEGELRQTEKTLAEQAKQYQQTIEELTRARSMDASALQMEHERAIKLNQEKDMEIAQLK
RDMEQLASDHRDTNEMLSITVAGQKQLTDLLQEKDVFMDTLKQNAADIQNEMENSISVVT
KEAEALRQALEEKDKQLGGMKEENSHLKEEIDRLRDQQSRPQPLAEPRTLDIITELETEI
TQLKSSRNALEEEVQTLRRTVEEQQASLLLLQQSLQTQQSELEQAHARHQQTTLNYDTLI
HARDEEIARLQQTVDRLSVSQGRADSPPVQGEVILQEDKTQTLNQENGNEKHDLSKVDIE
RLVRGIKEKETEISQLNEKNLSLTKQLDQLVVSRDEVGKLSQMILQKDLEIQALHARVSM
GGGGGHSQDVIFLQQQLQAYAVEREQVLAVLNEKTRENSQLRSDYHRLMDIMAGKEAALL
KLQQENQRLSNMSDPSGSHEMFKETIQNLSRIIREKDIEIDALTQKCQTLVTVLQTSGGE
SGSGSGGISSNQFEELLQERDTLKQQVKKMEEWKQQVITTVKNMQHESAQLQEELIKLQG
QVSADSDCSSKLSVDYSRLIQSYEQKERRLGSLSQELAQVQQTITQLSSTKDVLLGKLDS
VAQTPEVAVAQSIEPPLAAEAPSHLTDSPVNGERLQEELVRLRGQLAEKENMIRTLQENN
HRLSNSASASETEQRSQAEEVRQMRERLDAQHRAVREKDLLIKTKGDQLIQVSESLRNRE
NDNEVLKQAVTNLKERALILEMDVRNLKEENELVAARSREKESEFRALQETNMQVSLLLR
EKEFELSAMSEKAATVERMLKDKEQGKSGELNQLLNEMKSMQEKAVAFQQERDQVMMALK
QKQMETTAVQTELQHMKDKEQRLNLELERLRNHLLEIEDSYTREALAAEDRETELRRRVA
MLDEKLATSSSAVENASQQASMQVESLQEQLSGVVKQRDDALAQLRTSQEQVNQYAVSLS
NLQMVLEQFQQEEKAMYSAELEKHKREKEEWRRKAVKLEDQASALQMNLDEANAALDSAS
RLTDQLDLKEEQIEELKKQVDVRQEMLEEAQRKLMNLLNSTEGKIDKVLMRNLFLGYFHT
PKTKRADVLRLMGSVLGLSREEVDKMLDEDGRHGVTGWVSSWLGSRGAQSVPNTPQRPTS
GQGLNSSFSEMFVKFLEMESTPTLPAPRLPVHDIKPLSAPPPRRTSSTASNSSAVAAAAS
KRAGETNPFLAPRSAAVPLLAGSSSGSSGGHLLMKPISDALPSFTPVPVSAEASAGAVLK
DLLKQ
NT seq
5958 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcctggctgggtggtctaggctccggcctcggtcagtctctgggccaggtcagc
gggagcctgtcgtctttcaccggacagatatcaaactttaccaaagacatgttactggaa
ggggtggaagaagtcggagatgctgccacagagctacaggtgtccaattccaggttggct
gaggtcgaggcttcattttccactcagaaatctgagtatgacagattaaaaaagctgcat
gcagagctcgaggagaagctggaggcttcagagatccagattaaacgacagactgcagaa
tacagaactcttctacagcagaaagatgtggagatcagtcacctgaaagctcggcagagt
gcactgcatgaagaagtccagaagctgcagcagtcggcccagtctgcctcagccagcccc
gcactgctgccggtcacaactacttcctccaccactacctcctctgcttcatcttacctg
tcccggccctcaggatcccaccagggcttccatggcgacgatatggacctcagtgatgtc
atctggtcgcagcaggagatcaaccggctgtcgacggaagtcatgcgtctggaggcggag
gtggcacactggaggcgaatgtctcaggcatcaacagcagcaggagctggtaatggcgac
cagggtgagactctcaaacttcaaaggactattaaggagctgcgggaggagatgagtcgt
gaggtggatgaacaccagcatgaactggcagctctgcaggacgcccagcggcagaagttg
gctgacatcacccgacgacacagagaggagctcgcagagtacgaggagaggatagaggag
ctggaggaacagattcagagtggtggtcaaaccagtccttcatcagacgcctcaaagctg
cctgaactccagaaaaccattcggtccctgcaggaagcggcagagcagcgggagaagcag
ctggccgagctgtctgccagcctggaggaggcacaggggaaacaggcctcgctgcagctg
gagaaggatgaagcccaggaagaaaacgccgggctgctgcagaattacatgcggctgcag
gcgtccgtggccgagctccagacacgagtacaagagcaggaggggaaggctctgcaaaaa
gcccagctagaccacgagatccaagtgctgagacaaaaccttacagctgcagaaaaagaa
atagagagattgaaaaaccagactgaaacagaaccagaggaggaagttgagcatgcagac
atcttagaactgaacaccattattggagggctgagacaagaaaaggaggtcctagaacaa
gaaaagctcaatctgcaagaaagacttaaagtggcagaggaacaaataaatagcaacaat
gcagctgattctggagaatcagagtcactggaggatctgagggtggagctggagaggaga
gaaaaggccctgagagccactgaggaggagcgggagactctcatgtctgaactggaagaa
ctagatcgccaaaaccaggaggcaacacagcatatgatctcagtgaaggagcagctctct
gcacagctgaaggaggccgaggcagagctgacaagactgaccgcagagctcaacacaacc
aaagaccagaaaaggacactggagcaagaagtggagacccaaaaagagaaaacgagccag
agcgctttcacccttaatgaactgcatatgggcaaacagcagctggaacggacagtgaag
gagctgaaagacaaactgggacatgcacaggagcagagcagggaggcacgtagagaaatc
acagagctgaagaagagtttgcaagagaaagaggagctgttctctgctgctagagcagag
ctggatcaggcaggggagagaggagctgaagcacggggaactaaagaggagctagcaggg
aaggagagggagttatcagacctcaggagagaactggatgagatgaggggctctcaggag
aaggtgatgtctgcggactatgagttgaagatggagaacaggaggctgaaggcggagagt
gagcaggccctgggtaaagtagaggaactaaccaagcagatgaaggaaagccaagctgct
gtgaacaggacagtgagagaaaaggacactcgtatcgaagctctgaagctggagaaaaat
cagctggaaggtgaattgaggcagactgagaagacgctggccgaacaggcaaaacagtac
cagcagacgattgaggagctgactcgagctcgctccatggacgcctcagctttacagatg
gagcatgaacgcgccatcaaactcaaccaggaaaaagacatggagatagctcagctgaag
agagacatggagcagttggcgtcagatcacagagacaccaacgagatgctttcaatcaca
gtcgcaggacaaaagcagctgacggatctgctgcaagagaaggacgtcttcatggacact
ttaaaacaaaatgctgcagatatacaaaatgagatggagaacagtatctcagtcgtgacc
aaagaagccgaagctctcagacaggctctagaggagaaggataaacagctggggggcatg
aaggaggagaacagccatttgaaagaggagattgatcggctcagagatcagcagagcagg
cctcaacctctggctgagccccggactctggacatcatcacagagctggagacggagatc
acccagctcaagtcctccaggaatgccctggaagaagaggtccagactctgaggagaact
gtggaggagcagcaggcctccctccttctgctgcagcagtccctccagactcaacagagt
gagcttgagcaggctcatgctcgccatcagcagaccacacttaactatgacacactaata
catgctagagatgaagagatagcacgcctccagcagacagtagatcggctcagtgtgagt
cagggtcgtgcggactctccacctgtgcagggagaagtcatcctgcaggaggacaagacc
cagactctaaatcaggagaacggcaacgagaaacatgacctgtctaaggtagatatagag
agactggtgagaggcatcaaggagaaagagacagagatcagccagctgaatgagaagaac
ctctctttgaccaaacagctggatcagctggtggtgtctcgcgatgaggtgggtaaactc
tcccagatgatactgcagaaggatctggagatccaggcgcttcatgccagagtctccatg
ggtggaggtggcggacacagccaggatgtcattttcctacagcagcagctgcaggcttac
gctgtggagagagagcaagtgctagccgtgcttaatgagaagaccagagagaacagccag
cttcgctccgactaccaccgcctcatggatatcatggcagggaaggaagcagctctgttg
aagcttcagcaggagaatcagcgcctctccaacatgagtgacccctcaggaagccatgag
atgttcaaggagaccatccagaacctgtcgcgcatcatcagggagaaagacatagagatt
gatgcgttgacacagaagtgccaaaccctggtgaccgtcctgcagacctcaggaggagag
tctggttccggctctggaggcatcagcagcaatcaattcgaggagctgctgcaggagagg
gacacgctgaagcagcaggtgaagaagatggaggagtggaagcagcaggtgattacaaca
gtcaagaacatgcagcacgagtcggcccagctgcaggaggagctgatcaaactgcagggt
caggtctctgctgatagcgactgtagctccaagctgtctgtggactactctcgactgatc
cagagctacgagcagaaggagaggaggctgggaagtctgagtcaggaactcgcacaggtg
cagcagaccatcacccagctcagctccaccaaggatgtcctgttgggtaaactggacagc
gtagcacagactcctgaagttgcagttgctcagtctattgaacctcctctcgcagctgag
gctcccagccacctaacagattcacccgtaaacggtgagagactgcaggaggaacttgtg
cgactgcgaggacagctggctgagaaggaaaacatgatcaggacccttcaggagaacaac
caccggctctccaactcagcatctgcctcagagactgagcagagaagtcaggcggaggag
gttcggcagatgagagagaggctggacgctcagcatagagcggtgagggagaaagacctg
ctcatcaaaaccaaaggagaccaactaattcaggtcagtgagtcactacgtaaccgcgag
aatgacaacgaggtgctgaagcaggccgtgaccaacctgaaggagcgtgctctcattctg
gaaatggatgtgaggaacctgaaggaggagaacgagcttgtagctgcacgctctcgagaa
aaagagtcagagttcagagcgctgcaggaaaccaacatgcaggtttccctcctcctcaga
gagaaggagtttgaactgagtgcaatgagtgagaaggctgcaactgtggagaggatgctc
aaggacaaagagcagggtaagtctggtgagctgaatcagctcctgaatgaaatgaagtcc
atgcaggagaaagctgtggcgttccagcaggagagggatcaggtgatgatggcactcaag
cagaaacaaatggagaccactgcagtacagactgagcttcagcatatgaaggataaagaa
cagcgtctcaacttggagctggaaaggctgcgtaatcacctcctggagattgaagactcg
tacacgagagaagctctcgctgcagaggacagagaaaccgaactacgtaggagggtggcg
atgctggacgagaaactggccacttcctccagtgcagtggagaatgccagccaacaggcc
agcatgcaggtggagtctctgcaggagcagctgagtggagtggtgaagcagagggatgat
gcgctcgcacaactccgaacttcccaggagcaggtcaaccagtatgcagtgtcgctctcc
aacctgcagatggtgctagagcaattccaacaagaagagaaagccatgtactcagcagag
cttgaaaagcacaagagggagaaggaagagtggagaagaaaagctgtgaagctggaagac
caagcatccgcccttcagatgaacctcgacgaggccaacgctgctctagactcagcgtct
cgcctcaccgaccagctcgacctgaaggaggagcaaattgaggagctgaaaaaacaagtg
gatgtgagacaggagatgttggaggaggcgcagaggaaactgatgaacctcctcaacagc
acagaggggaagatagacaaagtcctgatgcgtaacctgttcttgggatacttccacaca
cctaaaaccaagcgtgccgatgtgctgaggctcatgggaagtgttctggggctgagccga
gaagaagttgataagatgttggatgaggacggacggcacggtgtaactggatgggtgtcg
agctggctgggaagcagaggagcacaaagtgtcccaaacactccacagagacccaccagt
ggccaggggctcaactcttccttctcagagatgtttgtaaagttcctggagatggagtcg
acccccacgctacccgcaccaaggcttccggtccatgacatcaagcctctgagcgccccg
cctccgagaagaaccagcagtacggcttccaacagctctgcagtagctgcagcagccagc
aagcgagccggcgagaccaatcctttcctggcccctcgctcggcggcggtgcctctgctc
gctggttccagctccggcagctccggaggtcacctgctgatgaagcccatctctgacgcc
ctgccatccttcacacctgtgccggtctcggctgaggccagtgctggagctgtgctcaaa
gacttgttaaagcagtga
DBGET
integrated database retrieval system
