Lates calcarifer (barramundi perch): 108886693
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Entry
108886693 CDS
T04895
Name
(RefSeq) sodium/calcium exchanger 3 isoform X1
KO
K05849
solute carrier family 8 (sodium/calcium exchanger)
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04020
Calcium signaling pathway
lcf04260
Cardiac muscle contraction
lcf04261
Adrenergic signaling in cardiomyocytes
lcf04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
108886693
04020 Calcium signaling pathway
108886693
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
108886693
04261 Adrenergic signaling in cardiomyocytes
108886693
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108886693
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108886693
Transporters [BR:
lcf02000
]
Solute carrier family (SLC)
SLC8: Na+/Ca2+ exchanger
108886693
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Others
108886693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calx-beta
Na_Ca_ex_C
Na_Ca_ex
Motif
Other DBs
NCBI-GeneID:
108886693
NCBI-ProteinID:
XP_018537185
UniProt:
A0AAJ7PS67
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Position
LG19:19786947..19896250
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AA seq
926 aa
AA seq
DB search
MEGSRPVKPGSSACLWLGLVSVAVAFLCTEARTTPSPLLSPSNATCEGNSKCLPGIILPI
WYPEDPSMGDKIARVIVYFVALIYMFLGVSIIADRFMAAIEVITSQEREIVIKRPNGETT
TTTIRVWNETVSNLTLMALGSSAPEILLSVIEVCGHDFKSGELGPSTIVGSAAFNMFVII
GLCVSVIPQGEVRKVKHLRVFFVTAGWSIFAYIWLYMILAVFSPNEVQVWEGLLTLAFFP
ICVLLAWVADRRLLFYKFMHKKYRTDKHRGVIIETETERSKGIEMDGKMVNSHFMDGGAA
SNLIGLIESKEVDESRRDMIRILKDLKQKHPEKELDQLVEMANYYALSHQQKSRAFYRIQ
ATRMMTGAGNILKKHVAEQAKKSASVQEVHVDEPEEYVSRIAFEPAVYQCLENCGAAILT
ITRKGGDINKTIYVDYKTEDGSANAGADYEFTEGTVVFKPGEMIKEISIGIIDDDIFEED
EHFFVRLSNLRVLETEDEVLSPNSLPYPKAALGFPTVATVTILDDDHSGIFTFESNSVHV
SESIGIMEVKVLRTSGARGTVIVPYRTMEGLAKGGGEDFEDTYGELEFKNDETCKLIHVK
IIDDEEYEKNKNFFLELAEPRMVDMSLQKALLLANDVPDRKLTSDEEEAKRIAEMGKPVL
GEHSKLEVIIEESYEFKSTVDKLIKKTNLALVVGTNSWRDQFMEAITVSAGDEDEEDTGE
ERLPSCFDYVMHFLTVFWKVLFACVPPTDYLNGWACFTISIVIIGLLTAVIGDLASHFGC
TIGLKDSVTAVVFVALGTSVPDTFASKVAAVQDTYADASIGNVTGSNAVNVFLGIGMAWS
VAAIYWHMKGKPFVVEAGSLAFSVTLFTIFAFLAISVLLYRRRAHIGGELGGPRGHRLAT
SAFLFSLWFLYILFSSLEAYCHIEGF
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggagggttcaaggcctgtaaagccggggtcatcagcctgcctctggttggggctggtc
tctgtggctgtagccttcctttgtacagaggcccggaccactccgagccctctgctcagc
cccagcaatgcgacctgtgaggggaactccaagtgtcttccggggatcatcctgcccata
tggtatccggaggatccttccatgggagacaagatcgcacgggtcattgtgtattttgtg
gccctgatctacatgtttctcggagtgtccatcattgccgaccgcttcatggcggccatt
gaggttatcacctcccaggagagggaaattgtcatcaaaaggcccaatggggaaacgacc
accaccacaatccgggtgtggaatgaaacggtctccaacctcaccctcatggccttaggc
tcgtctgcccctgaaattctgctttctgtaattgaggtttgtggacatgactttaaatct
ggcgagcttgggccctccacaatcgttggcagcgcagctttcaatatgtttgtcatcatt
ggcctctgtgtgtctgtcattccccaaggagaggtacgcaaggtcaaacacctcagagtg
ttctttgtcactgcgggctggagcatcttcgcttacatctggctctacatgatcctggct
gtgttttctcccaatgaagtccaggtctgggagggtctactcacactggccttcttcccc
atatgcgtactcctcgcctgggtggcggacaggcgactgctcttctacaaattcatgcac
aagaagtatcgcactgacaaacacaggggcgtcatcatcgagacggagacggaacgctcc
aaggggattgagatggatggcaagatggtcaactctcacttcatggatggaggtgcggcc
agcaatctgatcggtttgatcgagagcaaagaggtagacgagtcccggcgcgacatgatc
cgcatcttgaaagacctgaagcagaagcacccagagaaagagttggatcagctggtcgag
atggccaactactatgctctctcgcaccagcaaaagagccgtgccttctaccgcatccaa
gctacacgcatgatgacaggcgccggaaatatcctgaagaaacatgttgcagagcaggcg
aagaaaagcgccagtgtgcaggaggtgcatgtggatgaaccagaagaatatgtgtctcgg
attgcttttgagcctgctgtctaccaatgcctcgagaactgtggtgccgccattctgacc
atcactagaaagggtggcgacatcaacaagacgatctacgtggattataagacagaggac
ggctctgctaacgctggggctgactatgagttcacagagggtacagttgtgttcaaacca
ggagagatgatcaaggaaataagcattggcatcatagatgacgacatctttgaagaggat
gagcacttttttgtccgcctcagtaacttgcgtgtcctggagactgaggacgaggtgctg
tccccgaacagtctgccatacccaaaggctgcactgggcttccccaccgtggccactgtg
accattctggatgacgatcattcaggcatcttcacctttgagagcaactcagtgcacgtc
agtgagagcatcggtattatggaagtgaaagtgctaaggacttctggagcgagggggacg
gtcattgtgccttatcgcaccatggagggactcgccaaaggaggaggggaggacttcgaa
gacacctacggagagctcgagttcaaaaatgatgagacgtgcaaacttattcacgtgaaa
attattgacgatgaagagtatgagaaaaacaagaacttcttcctggagctggccgagcct
cgcatggtagacatgagtctgcagaaagccctgttgttagctaacgatgtgccagacagg
aagctgacatcagacgaggaggaagccaagcggatcgcggagatggggaaaccagtgctg
ggggaacactccaaactggaagtcattattgaagaatcatatgagtttaagagcacagtg
gacaagctgatcaagaagaccaacctggctctggtggtgggaacaaactcctggcgagac
cagttcatggaggccattacagtcagtgcaggagatgaggacgaagaggacacgggcgaa
gaacggctgccgtcctgcttcgactacgtcatgcacttcctcaccgtcttctggaaggtc
ctgttcgcgtgcgttcctcccacagattacctgaacggctgggcctgcttcaccatctcc
atcgtcatcatcggcctgctcacggccgtcatcggcgacctggcgtctcacttcggctgc
accattggcctaaaggactcggtcactgctgtggtatttgtggcactcggtacatctgtc
ccagacacttttgccagtaaggtagctgcggtccaggacacctacgcagacgcctccatc
gggaatgtgactgggagcaacgccgtcaatgttttcctgggaatcggcatggcctggtcg
gtggccgccatctactggcacatgaaagggaagccgttcgtggtggaagccggctcgctg
gccttctccgtcactctcttcaccatcttcgccttcctggccatctcggtgctgctttac
cggcgccgggcccacatcggaggagaactgggcgggccccggggacacagactggccaca
tcagccttcttgttcagcctctggttcctttacatcctcttctccagtctggaggcctac
tgtcatatagagggcttctaa
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