Lates calcarifer (barramundi perch): 108886700
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Entry
108886700 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 5
KO
K11800
DDB1- and CUL4-associated factor 5
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108886700
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108886700
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_WDR75_1st
Beta-prop_SPT8
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
108886700
NCBI-ProteinID:
XP_018537211
UniProt:
A0AAJ7PSA0
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Position
LG19:19694223..19714316
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AA seq
797 aa
AA seq
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MKELKGCGMRSSVGFLSRRELTGQPLMKEEFQRRRLAGCTSLYKKDMLGHFGCVNAIEFS
NNGGEWLVSGGDDRRVLLWHMEKAIHARSKPVKLKGEHLSNIFCLAFDSTNKKVFSGGND
EQVILHDVERRETLNVFLHIDAVYSLSVSPVNDNVFASSSDDGRVLIWDTREPPHGEPFC
LASYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPRSSLLRYGGSMSLQSAMSVRFN
STGTQLLALRRRLPPVLYELHSRLPSFQFDNQGYFNSCTMKSCCFAGDKDQYILSGSDDF
NLYMWKIPKDPEAGGPGRVVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVEKVIKVWSP
YQQPDSLGDLEGRVEDKSRSLYTHEEYISLVLNSGSGLSHDYVSQSIQEDPRMMAFFDSL
VRREIEGWSSDSDSDLSEEAIMQLHARGRRSTRATPAVPTAASAAGHHSDSDNSSSSSLA
GPDASGGEEQARAEGEERPRRRGRHQRHQSGFLVNEDSDSSEFWLDPMPRPRSPSPRDNS
TLSSPTSSPSLPAEASSSSTSTSSSSSDDEERRSAVRRRNVMRRRRMHVVSRAGDRPESV
QALFSAIDSCSYPSISIDDLSSSSSGEEQNSLQIKPQTGGAGEEEKCLSPSDFVCSSPVM
SPESQENEEGSDRTEPETRPAASPQSLDGHRTEGRAASEPTLDSSDSGEACSSSAAADSN
SQSRRSPGVNGQHRTVASHVSENLYVSSESEGETGITPEDTRPRREKGPAQSALKRTHVG
SEEGESGSSPSEKKLKT
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagctgaagggctgcggtatgcggtcctcggtgggctttctgtcccgcagagag
ctgactgggcagccgctcatgaaggaggaattccagagacgcaggctagccggctgcacc
agcctctacaagaaggatatgctcggacatttcggatgtgtcaacgccattgagttctcc
aacaacggcggggaatggctggtgtctggaggagatgatcgccgggtgctcctgtggcac
atggagaaagccatccacgctcggtctaaacctgtgaaactgaagggggagcacctgtcc
aacatcttctgcttggcctttgacagtaccaacaaaaaggtcttctctggaggaaatgat
gaacaggtgattcttcatgatgtggagagaagggagactctgaacgtgttcctgcacatc
gatgccgtgtacagcttgtctgtcagcccggtaaacgacaacgtgtttgccagctcatct
gacgatggacgggtgctcatctgggacactcgcgagccgccacatggagagccgttctgc
ctggccagctacccctcagccttccacagcgtgatgttcaaccctgtggagcccaggctg
ctcgccacggccaactccaaggagggagttggattatgggacatccgcaagccgcgcagc
tcgctgctgcgttatggaggcagcatgtccctacagagcgccatgagcgttcgcttcaac
agcaccggcacccagctgctggcgctgcgtcgccgcctcccgcccgtcctctacgagctg
cactcccgcctgcccagcttccagtttgacaaccagggctacttcaactcctgcaccatg
aaaagctgctgcttcgccggggacaaagatcagtacatcttgtctgggtcggatgacttc
aacctctacatgtggaaaatcccaaaggatccagaagcaggaggccctggtcgtgtggtg
aacggggctttcatggtcttgaagggtcaccgctccatagtgaaccaggtccgcttcaac
cctcacacctacatgatctgctcatccggtgtggagaaagtcatcaaggtttggagtccg
taccagcagcctgacagtctaggtgacctggagggtcgtgtggaggacaagtcacgcagc
ctctatacccatgaggagtacattagcctggtgcttaacagcggcagcgggctgtcccac
gactacgtcagccagtccatccaggaggacccacgcatgatggctttctttgactcgttg
gtgcgtcgggagattgagggctggagctccgactctgacagcgacctgagcgaggaggcc
atcatgcagctccacgcccgtggacgccgctctacacgagccacaccggcagttcctacg
gctgcctcggccgccggtcaccacagtgactctgataactcgtcctcctcctctctggcc
ggacctgacgcctcaggaggggaggagcaagccagagcagagggggaggagcggcccagg
agacgtggcaggcatcagcggcatcagtctggctttctggtgaacgaagactcggattcg
agcgagttttggctcgaccccatgccccgacctcgctccccgagcccgagggacaactcc
acgttgtccagtcccacctcctccccttcacttcccgccgaagcctccagctcttccacg
tccacctccagttccagcagtgatgacgaggagcggcgcagcgcggtgaggcggcgcaac
gtcatgaggagaagacgcatgcacgtggtctccagagccggggatcgacccgagtctgta
caggctttgttttcagccattgactcctgcagttacccatcaatctcaatcgatgacctt
tcttcctcctcatcaggcgaggagcaaaactctctccaaatcaagccccaaactggcggc
gccggagaggaggaaaaatgtctgagcccttctgactttgtgtgttcgagcccagtaatg
tcccctgagagccaagagaatgaggaagggagtgacaggactgaaccggaaacccgtcca
gctgcgtctcctcagtcattggacggacacaggactgaagggagggctgcttcagagccg
actttagacagctctgacagtggagaggcgtgcagcagctcagcagctgcagacagtaac
tcccagagccgacgcagccctggagtgaacgggcagcaccggactgtggcatcacacgtg
agcgagaacctctatgtctcctcagaatcagagggagagactggcattacacctgaagac
accaggccgcggagagagaaaggcccagcacagagcgctctgaaacggactcatgtggga
tcagaagagggagaatcaggctcctcaccctcagaaaagaagttaaaaacataa
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