Lates calcarifer (barramundi perch): 108886934
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Entry
108886934 CDS
T04895
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03320
PPAR signaling pathway
lcf04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
108886934
03320 PPAR signaling pathway
108886934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108886934
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108886934
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
108886934
Nuclear receptors [BR:
lcf03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
108886934
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
108886934
NCBI-ProteinID:
XP_018537584
UniProt:
A0A4W6FKV7
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Position
LG3:complement(20092059..20113269)
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AA seq
470 aa
AA seq
DB search
MGDSRDSRSPDSSSVSSPPSGQRSPPLVPSAAASMTSLPPITSAGVNSPISSIGSPFSVI
SSSLGSPCLPGTPSVGYGPISSPQINSTVSMSGLHAVSSSDDVKPPLGLKQLSSHNPGPM
LSQKRLCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMVDKRQRNRCQ
YCRYQKCLAMGMKREVAKMNDRSVQEERQRNKERDGEVESTSAVNEEMPVEKILEAEMAV
EQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAG
WNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFDRVLTE
LVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQ
GRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacagcagagattcccgcagcccggacagttcgtctgtctcctcccctccatca
ggccaacgctcgccccctctggttccttcagctgcagcttccatgacctctcttcctccc
atcacctccgctggggtcaacagccccatcagtagcatcggctctcccttttccgtcatc
agctcctcactgggctcgccctgtctccctggcacgccatcggtgggctatggccccatc
agcagcccgcagatcaactcaacagtgtccatgtcagggctccatgcagtaagcagctct
gatgatgtgaaacctccactgggcttgaagcagctgtcgtctcacaacccagggccaatg
ctttcccagaaacgcctttgttccatctgtggagacagatcctctggtaagcactacggt
gtctacagctgtgagggctgcaaaggcttcttcaagcgaacagtgcgcaaagacctgacc
tacacctgtcgggacaataaagactgtatggtggataagagacagaggaatcgctgtcag
tactgccgctaccagaagtgcctggctatgggcatgaagagagaagtggccaagatgaac
gacagatctgtccaagaggaacggcaaaggaataaggaacgagacggtgaggtggagtcg
actagtgcagtgaatgaggagatgcctgtggaaaagattttggaagcagagatggctgta
gagcagaagacagagcttcatgcagatggaagttcaggtggcagctctcccaacgatcct
gtcaccaacatctgtcaggcagcagacaagcagctcttcaccttggtggagtgggccaag
aggatccctcacttctctgagctgcccctggatgaccaggtcatcctgctacgtgcaggc
tggaatgaactcctgattgcatcgttctcccatcgctccatctccgtgaaggacgggatt
ttactggccaccggcctgcatgtccacaggaacagtgctcacagtgcaggcgttggagcc
atctttgacagggcgcacaatgccgaggttggggccatatttgacagggttttaacagag
cttgtaagcaagatgagagacatgcaaatggacaagaccgagctgggctgccttcgagcc
atcatcctcttcaacccagatgccaagggtttgtccaaccccagcgaggtggagctcctg
agagaaagggtttatgcgtctcttgaggcatactgcaaacagaaataccccgatcagcag
ggcaggtttgcaaagctcctcctccggctcccagcactgcgctccattggtctaaagtgc
ttggagcacctgttcttctttaaactgattggtgacacgcccattgacaccttcctgatg
gagatgctagaggcgcctcaccagctcacctag
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