Lates calcarifer (barramundi perch): 108886961
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Entry
108886961 CDS
T04895
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2D isoform X1
KO
K05212
glutamate receptor ionotropic, NMDA 2D
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04020
Calcium signaling pathway
lcf04080
Neuroactive ligand-receptor interaction
lcf04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
108886961
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108886961
04082 Neuroactive ligand signaling
108886961
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108886961
Ion channels [BR:
lcf04040
]
Ligand-gated channels
Glutamate (ionotropic)
108886961
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
DUF8168_N
Gp7_5th
Motif
Other DBs
NCBI-GeneID:
108886961
NCBI-ProteinID:
XP_050924856
LinkDB
All DBs
Position
LG3:20572483..20751549
Genome browser
AA seq
2003 aa
AA seq
DB search
MVAPRPALSLLLAVLACTGPARPSPPLLLRPRERERDSGGVNIAVVHSGSSLLPETAVVG
GAGVGEPGPGLGPGLGNGPGGGGGGGGGGGGGGGGGGGGRGVTDTASLAGAAAMASFSSS
SSSLSLAALVGETVMTPSGQANVIYLAVNESSPGSLLLQLCELLATTPLQGLVFEEERPP
PPNRAPLAPMLEFVSAQTGVPVVAVGGGASLGREPQESGSIYLQFTCSTSLQLEVIFEVL
EEYDWTAFSVVTTRHHGYEDFLAMVEGMTDGSFIGWEKKSEVILNVTDDPGGARTKRLLK
DNEAQVRLLYCSLEEAELVFRAAWAAGQAGPSHMWFAVGPALSGLGLEGLPKALFAIRPQ
GWRDEPRRRIAKGVSVLTHGAMALRRDQGATSRSQYAGNCQSDGNQTHRVPDRIRYFTNI
SIGGRDYSFNSDGYLSNPLLDVISYTNGRGWEEVGWWENGHLRLRYHPWSRYGSFLKPLD
DSQHLRVVTLEERPFVIVEPADPGTSSCIRDSVPCRMPVNSSLVVDGAGPMKHCCKGFCI
DVLKRLAKIVGFTYDLYLVTNGRHGKNIDGEWNGMVGEVVSNRADMAIGSLTINEERSEV
VEFSVPFVETGISVMVSRSNGTVSPSAFLEPYSPAVWVMMFVMCLSVVAVTVFIFEFFSP
VGYNRSLQSAKKSGGSKFTIGKSVWLLWALVFNNSVPVENPRGTTSKIMVLVWAFFAVIF
LASYTANLAAFMIQEEYIDTVSGLSDKKFQQPTEQYPPLRFGTVPNGSTEENIRSNYPNM
HQYMIRNNQKGVEEAIDNLKTGKLDAFIYDAAVLNYMARKDEGCKVMTIGSGKVFATTGY
GIALHKNSRWKRPLDLALLQLVGDDEIDMLERLWLSGICHNDKIEVMSSKLDIDNMAGVF
YMLLVAMGLSLLVFAWEHLVYWKLRHCVKRSGGMDFLLALSRGMYSCCQFEDETAPGGSK
SSLPQYHTVTTMPTAPQQHLVTATVNNTTAIAMVQQQQQQKHHQQQQQGQTYTTMLPGSP
PTTGHSAMALGPSNSPLLEGPMPCSTFLPRHDRRLAVVDRWNRPKPEKVMSAGSSGGVGI
GGIAGGITELQAQQQYQQNLGQHWSLQGGVAGGAGGGGDTGLDEYKRYYGPIDPEGLGTN
SDQQAGGSQQTPKANPRGLKASGMPRLPPKGPQQGPGHLISKPPPPIPSSPRRPPFWRRG
SLAQARRKGSGGPLYENILPLGRRGGGRYGASDGVGRRGRRPPPPPPLPVPLSSPTHTPT
TPSSPCRFYSTCSSASSSSSSSTSSSSSSSSSVSLSRSNSSSSCSSDSSYNSSLSFRYRA
GDREFMVDDDYDSDLLTEESSLLLGSRRKIRSRRMSSRSLPCSPPPPPIPPRKPRPQRDY
GRERTGSQLAQLQEWWSSWGDRERGRGGTTSRGDGGVGREEKRHHKEREHERKRRKKGRK
KKKREERERERERKRRKTKKKRKKEDKMRKRERKRSEQEGGDPEKREELKSGTPDYPSYP
PLRRESFRKKSESSIRSYGWNIPGEDERKEREEKERDDGEDSRGKEKHHRRRNSKHYHGS
SSKPTTSVKFWGGGNPSSDTIPSAFLPLLPVSSKRRKSKSSDRDAVGMEGERRPLLGRNG
RGEMHSKEGLSFHEWESEVEDEEEDSEQERRKVERGKRRGGGRTMSDEERERDKVVGIYS
DDDGSSGEFGKFERYWEDHEGRAVGGIGGGGWFFSTYPSRDKAGSINSRDDLFLERGERW
GTAESGWGSSGGGGGGGADGGERGWGSGSHWPPPPLTPPPPRRYWSVDKLHIQDEKKSKR
KSKDKGRGHAACSSCHSPRHHPHSHSSKWARVTSRSQEELYHHCQSFGGPLKPKHDSSSS
SKPDRSQNPSKTGSQSNLSIQQRTQRTDRDRERGRQPSPPQNLVPNLPPPLPALPAPPSS
SHPIHAPPPTSSSSVSSPSVVSSTPGAPQSSSMASASAKLQYQRLRSVPQPQRFPQSPHL
PLKAKSLCSRRGSAHFSSVESEV
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atggtggccccaaggcccgccctctcactgctattggctgtcctggcctgcacggggccc
gcacgcccctcgccccccctgctgctccggccccgggagagagagagggactcgggtggt
gtcaacatcgccgtggtccactcgggctcctccctgctcccggagacggcggtggtggga
ggtgcgggggtcggtgagccggggccggggctggggcctggtctgggaaacggtccagga
ggaggtggtggaggaggaggaggaggaggaggaggaggaggtggaggaggaggaggaagg
ggagtaacagatacagcttcgttggcaggagcggctgcaatggcctcattttcctcctcc
tcgtcatccctgtcgctggcggcgctcgtgggggagacggtgatgacaccgtcaggtcag
gccaacgtcatctacctggctgtgaatgagagcagcccgggcagcctgctgctgcagctg
tgtgagctgctggccaccacaccactgcagggtttggtgtttgaggaggagagaccgccc
ccgccgaaccgcgcccctcttgcccccatgcttgagtttgtctccgcccagacgggggtt
cctgtggttgccgttgggggaggagccagcctgggacgagagccacaggagagcggctcc
atctacctccagttcacctgttccacctcgctccagctcgaggtcatctttgaagtgctt
gaagagtacgactggaccgcattctctgtagtgaccacccgtcaccatggctacgaggac
ttcctggccatggtggagggaatgacggatggttcgttcattggttgggagaagaagagt
gaggtgattcttaatgtgacagacgaccccggtggggcgcgaaccaaacggctgcttaaa
gacaatgaagctcaggtccgtctgctttactgctccctggaggaggctgagctggttttc
cgggcagcctgggcagcgggtcaggccgggcccagtcacatgtggtttgctgtgggacca
gctctgtccggtttgggcctggaggggttgcccaaggctttgtttgccattcggccgcag
ggctggagagatgagccacgcaggcgtattgccaagggcgtctctgtgctcacccacggg
gcgatggctctgcggagggaccagggggccaccagccggtcgcagtatgcaggcaactgc
cagagtgacggtaaccagacccatcgagtgccagacaggatcaggtacttcaccaacata
tctatcggtgggcgggattattccttcaacagtgatggctatctgtccaacccgctgctt
gatgtcatctcttacaccaatgggagaggctgggaggaggttggctggtgggagaatgga
cacctgcgtctacgttaccatccgtggtctcgttacggctctttcctgaagcctctggat
gactcccaacacctcagagtggtcaccctggaggagaggccctttgtcattgtggagcct
gctgacccgggcaccagctcctgcatccgggattctgtgccctgtcgcatgcctgtaaac
tccagtttggtggtggatggcgccgggcccatgaaacactgctgcaaagggttctgcatc
gacgtccttaagcgtctggccaagatcgtgggcttcacctatgacctttacctggtgaca
aacggccggcacgggaagaacattgatggggagtggaatggcatggttggagaggtggta
tccaacagggctgacatggccattggctctctcaccattaatgaagagaggtcagaggtc
gtggagttttccgtaccgtttgtggagaccgggatcagcgtcatggtttctcgcagcaat
ggcaccgtgtcaccttctgctttccttgaaccctacagcccagcggtgtgggtgatgatg
tttgtgatgtgcctgtcggtggtggctgtcaccgtcttcatctttgagttcttcagcccc
gtgggatacaaccgcagcctgcagagcgccaagaagtcaggtggatctaagttcactatt
ggcaagtcggtctggctgttgtgggcattggtcttcaacaactctgtgcctgtggagaat
cccagaggaacaaccagcaagatcatggtgctggtgtgggctttctttgctgtcatcttc
ctggcctcctacactgccaacctggctgccttcatgatccaggaggagtacatcgacacg
gtgtcagggctgtcagataagaagttccagcagccaacggagcagtacccaccgctgcga
ttcggcacggtgccaaacggcagcaccgaggagaacatccgctccaactaccccaacatg
catcagtatatgatccgcaacaaccagaagggtgtggaggaagccattgacaacctcaag
actgggaaactggatgccttcatttatgacgctgcggtgctgaactatatggccaggaag
gacgagggctgcaaggtgatgaccatcggctctggtaaggtgtttgctaccacaggctac
ggcatcgccctgcacaagaactcccgctggaaacggccactggacctggctctgctgcag
ctggttggagacgatgagattgacatgttggagcgtctctggctgtcgggtatctgccac
aatgataagatcgaggtgatgagcagtaaactggacatcgacaacatggcaggggtcttc
tacatgctgctggtggccatgggtctcagcctcctggtgtttgcctgggagcatctggtg
tactggaaactacggcactgtgtgaagcgatctggggggatggacttccttctggctctc
agcagggggatgtacagttgctgccagtttgaagatgagacagcaccaggaggcagcaaa
agctctttgccccagtatcacaccgtgaccaccatgcctacagcaccccaacaacacctt
gttacagccacagtaaacaacacgactgccattgccatggtgcagcagcaacagcagcag
aagcaccaccaacagcagcaacagggccagacttataccaccatgctacccggatcaccg
ccaactacaggacactcagcgatggctctaggtccctcaaatagccccttactggagggc
cccatgccttgctccaccttcttgcctcgccatgaccgcagacttgctgtagtggatcgc
tggaacaggccaaagccagagaaagtcatgagtgcaggcagtagtggaggagtgggcatt
ggagggatagcaggagggatcactgaactccaggcccaacagcagtatcagcagaacctt
gggcagcattggagcctgcaaggtggagttgcaggtggagcagggggagggggtgacaca
gggctagatgaatataagcgctactatggtcctatagatccagaggggctaggaactaac
tcagaccaacaggcagggggctcccagcagactcccaaagctaatcctcgaggcctcaaa
gcctcagggatgccacggctgcctcccaaaggcccccaacaaggcccagggcacttaatc
tccaaacctcctccaccaatcccatcttctccacgaaggcctcccttctggcgacgagga
agcctagctcaggccaggagaaaaggctcaggaggtcctctgtatgagaatatactccct
ctggggaggcgaggaggtgggaggtatggagcaagcgatggagttggaagaagagggcga
cgtcctcctccacctcctcctctgcctgtccccctttcctcccctacacacactcccacc
actccttcctccccatgccgtttctactccacctgctccagtgcctcgtcctcctcctct
tcctccacatcatcctcatcctcttcttcatcctctgtctcgctctcccggtcaaattcc
tcttcttcttgctctagtgacagctcctacaactcctcactgagtttccggtaccgagca
ggcgatcgagaatttatggtggatgacgattacgactctgatctactcacagaagagtcc
agcctcctcctgggatcacggaggaagattcgttcacgtcgcatgtcatcgcgctcactg
ccgtgcagccctccacctccaccaatccctccacggaaaccacgtcctcagagagattac
ggcagagagaggacaggcagccaactggcccaattacaagagtggtggtcatcgtgggga
gacagggaacgagggaggggagggacaacaagccgaggagatggaggagtgggtagagag
gagaagagacaccacaaagagagggagcatgaaaggaagaggaggaagaagggccgaaag
aagaagaagagggaggagagggaaagagagagggagcgaaagcgacgcaaaacaaagaag
aagaggaagaaagaggacaagatgagaaagagagagcggaagaggtcggagcaggaagga
ggagatcctgaaaaaagagaagaactcaaatcagggacaccagactacccatcataccca
cccctgaggcgagagtcctttcggaaaaagagtgaaagctccatcagaagctatggatgg
aacatcccaggcgaagatgagaggaaggaaagagaggagaaagagagggatgatggtgaa
gacagcagaggaaaggaaaaacaccacaggcgaaggaacagcaagcactaccatggctcc
agcagtaaacctacgacatcggtcaaattctggggagggggcaacccatcctctgacacc
attccatctgccttcctgcccttgttgcctgtctcttctaagaggaggaaaagcaaaagt
tctgacagggatgctgtaggaatggaaggagagaggaggccattgctgggacggaacgga
cgaggtgagatgcactccaaggaggggttgtcctttcatgagtgggagtccgaagtagag
gacgaggaagaagactctgagcaggagaggaggaaagtagagcgggggaagcgacgtgga
ggaggaaggacaatgtcagatgaagagcgcgaacgtgataaagtagttgggatatattcc
gatgatgatggttcctctggagagtttggaaagttcgagaggtactgggaggatcatgaa
ggcagggcagtaggagggattggagggggaggttggtttttcagcacctacccctctagg
gataaagccggcagcatcaacagcagagatgacctgttcctggagcgaggagagaggtgg
gggacagcagagagtgggtgggggtctagtggaggtggtggtggaggaggagcagatgga
ggagagagagggtggggatcaggatcacactggcccccgcctcctctcacaccaccacct
cctcggcgatactggtcagtggacaaactccacatacaggatgagaagaagagtaaacgc
aagtcaaaggacaaggggagggggcacgcagcttgttcctcctgtcattccccccgacac
catccgcactcccattcctccaaatgggcccgcgtaacctcgcgaagccaggaagagctg
taccaccactgccagagttttggtggtcccctgaagcccaaacatgactcctcctcctcc
tccaaacctgaccgctcacagaatccatctaaaactggcagtcagtcgaacctcagtatt
cagcagcggacacagagaacagacagggatcgagagcgaggaaggcaaccatccccaccc
caaaacctcgtacctaacttaccacccccgctccctgccctgccagctcctccatcctca
tctcaccctatccacgcccccccccctacctcgtcctcttctgtatcctctccctctgtg
gtctcatccaccccaggcgcaccccaatcctcctccatggcttcggcaagtgccaaactg
cagtaccagagattgcgctctgtaccccagccccagaggtttcctcagtctcctcactta
cccctcaaagccaagagcctttgctcgcgaaggggctcagcccatttctccagtgtggag
agcgaggtctga
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