Lates calcarifer (barramundi perch): 108887012
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Entry
108887012 CDS
T04895
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
lcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108887012
09124 Replication and repair
03420 Nucleotide excision repair
108887012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108887012
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108887012
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108887012
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108887012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
108887012
NCBI-ProteinID:
XP_018537702
UniProt:
A0A4W6E1L6
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Position
LG10:10727451..10733145
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AA seq
550 aa
AA seq
DB search
MASLSEEVLLVVKKVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKVQLQLVLHTGESTTFHFANESSALKDREAAKELLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLGGVNNTDPTLFNNKQEVGISGAFLADIRPQTDG
CNGLRYNLTADIIESIFRTYPAVKQKYSENVPHNLTEKEFWTRFFQSHYFHRDRINTGTQ
DIFSECAKQDEKGLKSLVVQGVKNPLVDLLSLEDKTLDEGYGVSTTQPSTSNANRTVKES
SNYAIIKRFNHHSAMVLAAGSRKGETPADQASETSSTDGNSRDSDFFQPPVKKVKLQEAI
EYEDLQRENRPKTVALNLKKSDRYAHGPVPLQSQQYTTSQDIINSVNYIRHEMANYKPNL
TQVVSSTAASSAIVALSPGGVLMQAGAQQAINQMVPSEVQGELKHLYVAAGELLRHFWSC
FPVNTPFLEEKVIKMKSNLERFQMTKLCPFQDKIQRQYLSTNLTGHLEEMLQTAYNKFHI
WQTRRMMRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcatcactatcagaggaggtgctgctggtggtgaaaaaggttcgccagaggaaacag
gatggcacactttatctgatggctgaacgtatagcctggggtccagagggcaaggaccgc
ttcacagtcagccacctatatgcagatattcgctgtcagaagatcagcccagatggtaaa
gccaaagttcagctccagctggtccttcacaccggtgagagtaccacattccactttgcc
aatgagagcagtgcactgaaagacagagaagctgcgaaggaactgctgcagcagcttctg
cccaagttcaagaagaaagccaacaaggagctggaggagaaaaacaggatgcttcaagaa
gatccagtgcttttccagttatacaaagatctggtggtgagccaggtgatcagtgctgag
gaattctgggccaacaggttagggggcgtaaacaacacagaccccacactattcaacaac
aaacaagaagttggtatatctggagcctttcttgcagacattagacctcagacagatggc
tgcaatggcttgagatataatctgacagctgacattattgaatccatcttcagaacatac
ccagcagtgaagcagaagtatagtgaaaatgtgcctcataacctgacggaaaaggagttc
tggacccgctttttccagtcccattattttcacagagaccgcatcaacacaggaacacag
gatatcttctcagagtgtgccaagcaggatgaaaaggggttgaagtcactggtggttcaa
ggggtgaagaatcctttggttgacctcctgtcattggaggataaaaccttggacgagggg
tatggagttagcacaacacaaccctcaacttccaatgcaaacaggacggtgaaggaaagc
agcaactatgccattataaagcggttcaaccatcacagtgccatggtgctggcagcaggc
tcacgcaagggggaaacaccagctgaccaagcaagtgagacaagcagcacagatggaaac
tcaagggattcggacttctttcaacctcctgtaaagaaggttaaattacaagaagccata
gagtatgaggatctgcaaagggaaaacagaccaaaaacagttgcactgaacctcaagaag
tctgacaggtatgctcatggtcctgtgccacttcagtcccaacagtatacaacaagccag
gatatcatcaactccgtcaactacatccggcatgagatggccaattacaaacccaacctc
actcaggtggtgtccagcacagcagccagttctgccattgtagcgctttctccaggtggt
gtcctcatgcaggcaggagcacagcaagccataaatcagatggtacccagtgaggttcaa
ggagagttgaagcacctttatgtagctgctggagagttattgagacacttttggtcctgt
ttccctgtgaacacaccatttttggaggaaaaggtgataaaaatgaagtcaaaccttgag
agatttcagatgaccaagctttgtccttttcaggataagattcagcgccagtacttaagt
acaaatctcacagggcacttggaggagatgttgcagacagcctacaacaagttccacatc
tggcaaacccgtcggatgatgaggaaaacctga
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