Lates calcarifer (barramundi perch): 108887113
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Entry
108887113 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108887113
04091 Lectins [BR:
lcf04091
]
108887113
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108887113
Lectins [BR:
lcf04091
]
C-Type lectins
Others
108887113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Ion_trans
Lectin_C
SUEL_Lectin
GPS
DUF5105
Aida_N
DUF6272
Motif
Other DBs
NCBI-GeneID:
108887113
NCBI-ProteinID:
XP_050929068
UniProt:
A0AAJ8DRS7
LinkDB
All DBs
Position
LG1:10342798..10372593
Genome browser
AA seq
2443 aa
AA seq
DB search
MCRTFLQLLILVSLSCLSWGEDEAEVTVSCPAYQKAFAGSCYEFVAHQRSFFSAQAWCEE
SGGHLAFIPDEDTQYFLQGHLDPEVDTWLGVARSASPNLTYSGTTEGALSWLDGSHITYS
NWASSPQPGAACGHILKDSGFQWEATRDCNKTLGFICQFESGRSIVCAGRNTTLQCGSGQ
VLMIDAGVYGRKNIHYCQPTLPPPTASTQHQCGWVDVVETITAHCHGRQVCHIAEVVNSF
GEPCPELGSYLSVDYHCKDGLALTVSTVAAVFNNVTISIKWLLDLSWGNLICRLSTGDGR
VVSLDSPEGLESSVMHRYTYPSTFTVALECTSNGTHFAAEKITTILEPITDIGVIRCYAE
KMFFHAANCKALYGRAFQIQIEVTSGSNVTYRIQSDEMVLSSLSVVRGNVPHNITVTQAM
VKQLGPGCHQLTLYASNVVTFPEVSTNLQVCVLEKIAGLQASVLTERNDCQDSPDITAET
KSCYKEAGKRPLIEKMNGGTEYTVKQKYLDVAKSNGVTVVVTSVGDEPVYTTFNTKTSSP
EKPAPTKDDTSGTGSTSGPTSGTGDNSGPTSGTGTTSGPTSGTGNNSGPTSGTGDNSGPT
SGTGGNSGTGDNSGPTSGTGGTSGPTSGTGGTSGPTSGTGDNSVAQPVAPANQWHRHHTV
AQPVAPATTVAQPVAPAGNSGPTSGTGGNSGTGDNSGPTSGTGDNSGPTSGTSGNSGPTS
GTSGAATTGDTTSPATTINFESLSCSISPSSGRIFEAFSITCKTKIPCANCHYCFKSEGR
HLRCSKKNEVKSVFLPLGDSQEDYKLIVTATLKNSSFAVSTTITTQVQDSTEASSVDGLK
KFMESDLSQLKEQGLVSGAAIAQIFSSVSDKLNSQSDESKKADRQKLREQMLNIMTDTVK
EVPSNTPEEVQVMARGLSAVVKKGDELSSSAQEEASLLFVSLSSSLLNVDVDKSEENKKE
IHSAASSIVEGASNILGYSTSTKNISDAVLLTLYNAQSALLILKDVNEEPSIIQTANIGV
FVKRVTPRSLHTESINIPKRSSPSFSLPVLPSNMLPSEEPVDIRMLSLDKNPFSWNERGN
ISGLIGALSLTTKDNSSICVENLNEDIEILLPRPVGEQVNTTVLDLGNFSTTVIDIPSDD
TTLVLKMVPSKDPLPIKLFLGYKAYPTETSHVAMTEMPHQGNTEEERYTWLLDPKTLKGN
TGVHYLVVRPVVGPGIKSINASLSVTSITAACKFWDESVLGWDNKGCKVGVQTTHLVTQC
LCTHLTFFGSSFFVTPNLVDPSRSAELFATFAENPVVVCFVGALFVAYFLVVVWARRKDI
QDTAKVKVTVLGDNDPMDEYRYLISVSTGYRRGASTSSQVAITLLGADGNSEPHHLTDPK
KCVFERGAVDVFLLTTPFSLGDLQGIRLWHNNSGSHPAWYVGNVMVQDLQTNQKWHFLCN
SWLAIDVGDCYLDKVFPVSTDVDLKRFSNLFFMKTTRDFSDGHLWYSVVNRPPSSTFTCV
QRVSCCFSLLLCTMLTSIMFYGXPTDPSEQTMDLGHFEFTWQQFMIGVQSSLIMFPVNIL
IVTVFRNTRPRETSCCKRQTKKTDSLEQERTLQIPSSQTATSNMNSSVTLDIVIKDITRI
ARSLSKSVKSNIPRTESEFGPGQHVDINAVLSVLEDFVRQNNKTSDSTLSKTQPQLPEGS
ASVHPGTNVEGIQKNSNKTQYLYRQLCHIDKELSLLGPSGFSTPHSYNQALQQVQGMKGF
LEDQLFTSSCVNPDAPAQKKLSPADSTDDGPSQKKRVCCHGGLPWWFIFVGWLLVIATST
VAGYFTMLYGLKFGKDRSISWLVSMIVSFFQSILVIQPLKVLCLAAFFALVIKKVDEEDF
QNVAIVRDDSNTGDCKDQQIVRQDRNLYEPPPPADIEKMKRNKIMEQKAFALLKEILTYM
VFMWMLLLVAYGQRDPNAFFLNQHIQASFGNDILDSMSLGDMFTWAKTSLLSNLFGVYPG
FITDGNSKLVGNARLRQLRVQKNSCQIARPMLQHVPDCHAPYSWEVEDMGFYGPGWNHSV
MDNTSTGTPSPWMYQTQAQLRAYPVWGKMVLYRGGGFVAELGPDLEKASRTLEYLFNNTW
LDMYTRVLFVEFTVYNANVNLFCIITLLLETAAVGAFQFHSELQSVRLYQSTGGLHIFVM
AAEIIYLLFILYYMFLQGKLMKEQRWAYFRNKWNLLELTIILLSWSAVAVFIKRTLVGNR
DMTYYQNHRDQFASFYETAAADLLLQYLIAFLVLLSTVKLWHLLRLNPKMNMITATLQRA
WTDISSFLVIIVIMFIAYSIVCKVIYGWKLSSYRTFADSLLTILSLQIGIFNYDEVLDDT
PVLGGLLFGSCIVFMTFVVLNLLISVILMAFNQEQIHHKPSDEEEIVDLMLKKICSLFGI
RYKDTKDAEVNGSSGLTLNNSRNMLSDSVDINIFQTSDNSPNP
NT seq
7332 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaggacatttctgcagctgctgatcctggtgtcactcagctgtctgtcatggggt
gaagacgaggcagaggttactgtttcctgcccagcatatcagaaggcctttgcaggctcc
tgctatgagtttgtggctcaccaacgctcttttttcagtgctcaagcttggtgcgaggaa
agtggaggacaccttgcatttattccagatgaagacactcaatatttccttcagggacac
ctggaccctgaggtagacacatggctgggagtagcacgttctgcctctccaaatcttacg
tattctggaactactgaaggtgctttgtcttggctggatggttcacatattacctattca
aactgggcaagcagcccgcagccaggagccgcctgtggacacatcttaaaggattcaggc
tttcagtgggaagccacaagagactgcaacaaaacactgggttttatctgccagtttgaa
tctggtagatccattgtgtgtgcgggtcgtaacaccactctgcagtgtggttctggtcaa
gtgttaatgatagacgccggcgtctacggtcgtaagaacattcattactgtcaacccacg
ctccccccaccaacagcatccacacaacatcagtgtggctgggtggatgttgtggagaca
atcacagctcactgccatggccgtcaggtttgccacattgctgaagttgtgaactccttt
ggtgaaccctgtcctgagctggggagctacctgtctgtggactaccactgcaaagatggg
ctcgcactgacagtgagcactgtggctgctgtttttaataacgtcaccatcagcataaag
tggctcttagatttgtcatggggaaacctcatctgcaggctgagcactggagatggccgt
gttgtttctctggacagtccagaggggttggagagcagtgtgatgcacagatatacttat
ccaagtacatttactgtggcacttgagtgcaccagcaatggcacacattttgctgctgag
aaaataactaccattctagagcccatcaccgacattggtgtaatcaggtgctatgctgaa
aagatgtttttccatgcagccaactgtaaagccctgtatggacgggcatttcaaattcaa
atagaagtaacatcaggttcaaatgtgacctatagaatccagagtgatgaaatggtcttg
tccagtttatctgtggtcagaggaaatgttccccacaacatcacagtgacccaagcgatg
gtgaagcagctcgggcctggctgccaccagctgactctttatgcatctaacgtggtcaca
ttccctgaagtgtccacaaacctgcaggtgtgtgttttggagaaaatagctggacttcag
gcatctgtgctgacagagaggaacgactgtcaggactctccagatattactgctgagaca
aagagttgctacaaagaggcagggaaaaggccgcttatagagaaaatgaatggcgggact
gaatacactgtcaaacaaaagtatcttgatgtggccaagtcaaatggtgtcactgtggta
gtaacttctgtgggtgatgaacctgtttacacaacattcaacacaaagacatcatctcca
gagaaaccagctccaaccaaagatgacaccagtggcactggcagcaccagtggcccaacc
agtggcaccggcgacaacagtggcccaaccagtggcaccggcaccaccagtggcccaacc
agtggcaccggcaacaacagtggcccaaccagtggcaccggcgacaacagcggcccaacc
agtggcaccggcggcaacagtggcaccggcgacaacagtggcccaaccagtggcaccggc
ggcaccagtggcccaaccagtggcactggcggcaccagtggcccaaccagtggcaccggc
gacaacagtgtggcccaaccagtggcaccggccaaccagtggcaccggcaccacacagtg
gcccaaccagtggcaccggcgacaacagtggcccaaccagtggcaccggccggcaacagt
ggcccaaccagtggcaccggcggcaacagtggcaccggcgacaacagtggcccaaccagt
ggcaccggcgacaacagtggcccaaccagtggcaccagcggcaacagtggcccaaccagt
ggcaccagtggcgctgctaccaccggggacacaacttcaccagcaaccaccatcaatttt
gaaagcctctcatgtagcatatcaccatcgagtggaagaatcttcgaagctttcagtata
acttgcaagactaaaattccctgtgcaaactgtcactattgttttaagtctgagggtagg
catctgcgttgcagcaagaagaatgaagtgaaatcagtcttccttcctcttggagacagc
caagaggactacaaactgatagtcacagcaactctaaaaaatagcagctttgcagttagc
accactataactacacaggtgcaggattccacagaagcctcttcagtagacggtcttaag
aagtttatggagagtgatttgagtcaactgaaggaacaaggcctagtgtcaggagcagcc
atagcacagatcttcagctctgtgtccgacaaactcaacagtcaatctgatgaatcgaaa
aaagctgataggcaaaagcttcgtgagcagatgttgaacataatgactgacacagtaaaa
gaggttcccagcaacactcctgaagaagttcaggtgatggccagaggtctgtctgctgtt
gtcaagaaaggtgatgagctcagctcctctgctcaggaagaggcttcattattatttgtg
agcctcagctcatctctcctcaacgtggacgtggacaaaagtgaagaaaacaagaaagaa
attcacagtgcagccagcagcattgtagagggagcaagcaatatcctgggttattccact
tccacaaaaaatatctctgatgccgttcttcttacactgtacaatgcacagagtgcactg
ttgatattaaaagatgtcaacgaggagccatctattatccaaacagctaatattggtgtt
tttgtgaagagagtgacaccgagaagtttgcacacagagtctataaatattcccaaacgt
tcctcaccttcattttctctcccagtcctaccgtccaacatgttaccttcagaagaacca
gtggatatacgaatgctgagtttagacaaaaatccattttcctggaatgagagaggaaac
atcagtgggctaataggtgctctatccctcacaacaaaagataattccagtatctgtgtg
gagaatttgaatgaggatattgagattctgttgccaaggcctgttggagagcaagtaaac
accacagttttggacctggggaacttcagcacaacggtcatagacattccttcagatgac
accacgctggtgttaaagatggtgccttcaaaggacccattacccatcaaactgttcctt
ggttataaggcgtatccaacagaaacaagtcatgtagcaatgacagagatgcctcaccag
ggaaatacagaagaggagagatatacttggctactagatcctaagacattaaagggaaac
actggagtgcactatcttgtagtgaggcctgtcgtgggtccggggataaaatctatcaat
gccagtttatcagtcacctccattactgctgcttgtaaattttgggacgaatcagtgctg
ggctgggacaataaaggatgcaaggttggtgttcagaccacacatttagtcacccagtgc
ctctgcacccacctcaccttctttgggagctctttctttgtcactcccaacctcgtcgac
ccgtcgcgctctgccgagctgtttgcaacctttgctgagaacccagtggttgtgtgcttc
gtgggtgcgctctttgtggcctatttcttggttgttgtgtgggcacggcgaaaagacatc
caagacacggccaaggtgaaggtgacagtgctgggagacaatgaccccatggacgagtac
cgctacctgataagtgtgagcactgggtatcggagaggagcctccacttcctctcaggtg
gcaataactctgctgggtgcagatggaaacagcgagccccaccatctgacagatccaaag
aaatgtgtgtttgagagaggagcggtggatgtgttcctgctaactacacccttctccttg
ggagacctgcagggcattaggctgtggcacaacaactcagggagccatcctgcctggtat
gtaggcaatgtcatggtgcaggatttacagacaaaccagaaatggcatttcttatgcaac
tcctggctggccatagacgtgggtgattgctaccttgataaagtttttcctgtctcaaca
gatgtggatttgaagaggttcagtaatttgttcttcatgaaaacaacaagggatttcagt
gatgggcacctctggtactctgtggtcaaccgaccaccgagcagcaccttcacttgtgtg
cagagagtgtcctgctgtttctccctgctgctctgcaccatgctgaccagcatcatgttt
tacggcnatccgacagatccatctgagcagaccatggacctgggtcactttgagtttacc
tggcaacagttcatgattggagttcagagttcactcatcatgtttccagtgaatatcctc
attgtcactgtcttcagaaatacccgtcctcgggagacatcttgctgcaaacgccaaaca
aaaaaaacagatagccttgagcaagagaggactttgcagattccttcctcacagactgcc
accagcaacatgaattccagtgtcactttagatattgtcatcaaggatatcacaagaatt
gcccgttcactctctaagtcggtgaaaagcaacatcccacgcacagagtccgagtttggg
ccgggacaacatgtcgatatcaatgctgtcctttctgtgctggaggatttcgtcagacag
aataacaaaaccagtgacagcaccctgtcaaaaacacagcctcagctaccagagggcagt
gctagtgtgcatcctggaacaaacgtggagggcattcagaagaacagcaacaaaacccag
tatctgtacaggcagctgtgtcacatagacaaagagctgagtctgctgggaccctccggc
ttctccacccctcacagctacaaccaggctctgcagcaagtccagggcatgaagggcttc
cttgaagatcagctcttcacatccagctgtgtcaacccagatgcacctgcccagaagaag
ttgagtcctgcagatagcactgatgatggccctagtcagaagaaaagggtgtgctgtcat
ggagggctaccatggtggtttatttttgttggctggctgcttgtgatcgccaccagtact
gtagcgggatatttcacaatgctttatgggttgaaatttggaaaggaccgttccataagc
tggttggtatccatgattgtctccttttttcagagtattctcgtcattcagccactgaag
gtgctgtgccttgcagccttctttgcacttgtaataaagaaagttgatgaggaagatttt
caaaatgtggcaattgttagagatgactcaaacacaggtgattgcaaggaccaacaaata
gtcagacaggataggaatctttatgagccgcctcctcctgcagacattgagaagatgaaa
aggaacaagattatggagcagaaagcctttgccctcctcaaagagattttgacctacatg
gtgttcatgtggatgttgctgctggtggcgtatggccagagagatcccaatgcttttttc
ctaaaccagcacatccaggccagcttcggtaacgatatcttggacagcatgagtcttggg
gacatgttcacttgggccaaaacttctctactcagtaacctctttggagtttatccagga
tttatcacagacggaaactccaagctagtgggtaatgcccgtcttcgtcaactgagagtg
cagaagaactcctgtcagatcgcacgccccatgctgcagcacgtgccagactgtcatgcg
ccgtattcttgggaggtggaggacatgggcttctatggccctggctggaaccactctgtg
atggataatacctctacgggaacccccagtccctggatgtaccagacacaggctcagctc
agggcttaccctgtctggggcaaaatggtactctacaggggaggtggctttgtagcagag
cttggcccggatttagaaaaggccagcagaacccttgagtatctgttcaacaacacatgg
ctggatatgtacacaagggtcctctttgtagagttcactgtttataatgctaatgtgaac
ctcttctgcatcatcacactcttgttggagaccgcagctgtaggagcgtttcagttccac
agtgagctgcagagtgttcgtctttaccagtcgaccggtggtcttcacatctttgttatg
gctgcagagatcatatacttgcttttcatcctttattacatgttcctgcagggtaaatta
atgaaggaacagcggtgggcgtacttcaggaacaagtggaatcttctggagctgactatc
atcttattgagctggagcgctgtggctgtctttatcaagaggaccctggttggaaaccgc
gatatgacctactaccaaaaccacagagaccaatttgccagtttttacgagacagccgcc
gcagacttgttgcttcagtatctgatcgccttcctcgtcctgctctccaccgtcaaactg
tggcacctgctcaggctgaaccccaagatgaacatgatcacagccacactgcagcgagcc
tggacggacatatccagcttccttgtgataattgtcatcatgttcatagcatattccatt
gtgtgcaaagtgatttatggctggaagctgtcctcctatagaaccttcgcagattctctc
ctcacgatcctcagcttgcagataggcatctttaactacgatgaggtcttggatgacacc
cctgtgctcggtggattgctcttcggttcctgcatcgtgttcatgacgtttgtggtgctc
aatctcctcatctcagtgatcctcatggcattcaaccaggagcagatacaccacaagccc
tcagacgaggaggagattgtcgacctgatgctgaagaagatctgcagtctttttgggatc
agatataaagatactaaagacgctgaggtgaatggcagcagtggcttgacccttaataac
agcagaaatatgcttagtgattcagttgatataaacatttttcagacatctgacaactca
ccaaacccctag
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integrated database retrieval system
