Lates calcarifer (barramundi perch): 108887273
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Entry
108887273 CDS
T04895
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108887273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108887273
Spliceosome [BR:
lcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
108887273
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
108887273
NCBI-ProteinID:
XP_018538093
UniProt:
A0A4W6D3B0
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Position
LG15:11053147..11058272
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AA seq
508 aa
AA seq
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MSLADELLADLEEAGDEGEDGLYPEGEEGESDGEATQGRTEGGLEDIPEEMEVDYSKAES
VTSIAKLRNSKQFSEIIDKISAYIGKQRKNSEVSGPVEADPEYRLIVAANNLTVEIDNEL
NIIHKFTRDKYSKRFPELESLVPDSLDYIRTVKELGNNLEKCKNNETLQQILTNATIMVV
SVTASTTQGSLLSEEELKQLEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGAST
AAKIMGIAGGLTNLSKMPACNLMLLGAQRKTLSGFSSTSLLPHTGFIYHCDVVQSLPPDL
RRKAARLVAAKCTLAARVDSFHESSDGKVGYDLKEEIERKFDKWQEPPPVKQVKPLPAPL
DGQRKKRGGRRYRKMKERLGLTEIRKHANRMTFAEIEDDAYQEDLGFSLGQLGKSGSGRV
RQAQVNEATKARISKSLQRTLQKQSMTYGGKSTVRDRSSGTSSSVAFTPLQGLEIVNPQA
AEKKVAEANQKYFSNMAEFLKVKKEAKM
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtctctggcagacgagctcctggctgacctggaagaggctggagatgagggggaggat
gggctgtatccagagggagaggagggggagagtgatggagaggcgacccagggaaggaca
gagggagggctggaagacatcccagaggagatggaggtggactacagtaaagctgagagc
gttacatccatcgccaagctccgcaacagcaagcagttttcagagatcatcgacaaaatt
tcagcatatattggaaagcagcgaaagaattcagaggtctcaggtccagttgaagctgac
ccagaatacagactgatcgtagcagccaataacctcacagtagagattgacaatgagctc
aatatcattcacaagtttaccagggataaatattccaagaggtttccagagcttgagtcg
ctggtgccagattctttagattacattcgcacagtgaaggaactggggaataatctggag
aaatgcaagaataatgaaactctgcagcaaatcctcaccaatgccactattatggttgtc
agtgttacagcctcaaccacacaggggtcactgctgagtgaggaagaactaaagcaactg
gaggaggcatgtgatatggctctggagctaaaccagtctaaacacaggatttatgaatat
gtagagtccagaatgtcattcattgccccaaatctgtccatcattgttggagcatcaaca
gctgcaaagatcatgggtattgctggcggcctcactaatctctcaaagatgccggcctgt
aacctgatgcttctgggagctcagaggaaaaccctgtccggcttcagcagcacatcactg
cttccccacactggcttcatctaccactgtgatgttgtgcagtctctaccacctgacctc
aggaggaaagcagctcgtctggtggctgcaaagtgcactctggctgcccgagtggacagc
ttccatgagagttcagatggcaaggttggctacgatctgaaagaagagatagagaggaag
tttgataaatggcaggagcctccaccagtgaagcaggtcaaaccactgccggccccactg
gatggacagaggaagaagagaggaggaaggaggtatcgaaagatgaaggagcgtctcggg
ttgactgagatcaggaaacatgccaacaggatgacctttgccgagattgaagatgatgca
tatcaggaggatctcggctttagtctgggtcagctggggaagagcggcagcgggcgtgtc
aggcaggctcaggtcaacgaggccaccaaggccagaatctccaaatcgctccagaggaca
ctgcagaagcagagcatgacatatggaggaaagtcaacagtcagagatcgctcctcagga
accagctccagcgtagcgttcactcctctacaggggctggagattgtgaacccacaggcc
gcagagaagaaggtggctgaagcaaaccagaaatatttctctaacatggcagagttcctg
aaagtcaagaaggaagccaagatgtga
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