Lates calcarifer (barramundi perch): 108887297
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Entry
108887297 CDS
T04895
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2D
KO
K05212
glutamate receptor ionotropic, NMDA 2D
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04020
Calcium signaling pathway
lcf04080
Neuroactive ligand-receptor interaction
lcf04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
108887297
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108887297
04082 Neuroactive ligand signaling
108887297
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108887297
Ion channels [BR:
lcf04040
]
Ligand-gated channels
Glutamate (ionotropic)
108887297
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Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
ANF_receptor
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
108887297
NCBI-ProteinID:
XP_018538146
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All DBs
Position
LG15:complement(10758539..10807016)
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AA seq
1958 aa
AA seq
DB search
MVAIPTLSLLLVLAEWAGLVDASPHLLLRPSPRERDAGAMMNFNIAVIHAGATVQTEAAV
AGPGGRVLYPGFGRVYGSLGESVVTQWGSANVIWLQVNDSSPKTVLSQLCELLAARPLQG
LVYEEERPPRTAWGPLAPMLEFVSAQTGLPIVAVGGGAGLGRMPQESGSIFLQFSSSTAL
QLEVIFEVLEEYDWTAFSVVYTRHHGYQDFLSVVEGLTDGSFIGWEKKSVVMLNVTDDPG
GARTRRLLKENEAQVRLLYCSQEEAEMIFRAAWAAGQAGASHMWFAVGPALSGLGMESLP
RALFAVRPQGWRDEPRRRIARGVSVLTHGAVAMRKDYGTTGGPNFVTNCMTDANQTQRLR
GRMRYFSNITLGGRDYSFNSDGYLANPFLDVISWTPGRGWEDVGWWENGVLRLRYPAWSR
YGPFLKPPDDAQHLRVVTLEERPFVIVELADPASGTCIRDSVPCRRPLNASAIHEGVAPM
KQCCKGFCIDILKRLAKIVVFTYDLYLVTNGKHGKKIDGVWNGMVGEVVYKRADMAIGSL
TINEERSEVVDFSVPFVETGISVMVSRSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVT
VFIFEFFSPVGYNRSLQNGKKAGGSTFTIGKSVWLLWAIVFNNSVPVENPRGTTSKIMVL
IWAFFAVIFLASYTANLAAFMIQEEYIDTVSGLSDKKFQHPEEQYPPLKFGTVPNGSTEK
NIRSNYPDMHQYMGKYNQKGVEDAILNLKTGKLDAFIYDAAVLNYMARKDEGCKVMTIGS
GKVFATTGYGIALHKNSRWKRPLDLALLQLVGDDEIEMLERLWLSGICHNDKIEVMSSKL
DIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWKLRHCMATSSGKLDFLLAISRGMYSCCSF
EDETAPAKSLPTHHHTAMVTVPSQPHVVSTSMTNPAIAMAQQQQPPQQQQPQPVYKTPLP
GSPPTVVHSGTALGPSNTPIAGAPLPCSTFLPRPDRRLAVVDRWRLPKTATATNPMAVRG
TITDMGPFAQKVPPNWASTAGGGGGLDGYKRYYGPIDPEGLGPCMEQQAGSQTPKTMPRG
HPQPPPASVAFYSEKGMDHGVGKRVVGGGSGGQGKGAAKSLGTPRLPPKSQAPLPPTPPL
PHPSPPLPSSFWRKRRPKKPKEPGGPLYENILPLGRRGGARDGVREGGGRRARPLSPPLS
LPVPVPLSPSYTPPSPSASLHYTSSSSSSTTSSTSTSSSASSSRSTSPTYSYSSSRSTRD
RTGGIDGEDDDDDEELTEESSLLLGRGRERERSIIRPRSLSHGRLPPPIPPRKPRTSWGD
RERERERERGGSQLSQLQEWWASWSERERSGAGGDAERQKREKKRRKEKEKEKKKKKKNK
KRKKREERERERERERKRRKVKKKKKKALKTKKRKKSTGGKRSEPEEGDIEADREGEVEG
EREGGIQDYPSFSAQYRSTFGEKGRDSWEGERERGRREGDEGNDREEEDSGRSRERHPKS
SRSHSRHRTPSKRYPNLNKLPASVKFWVNGRGDDSNTPPASLHPLLPSSKRRRSGGMDRE
DSGRLGERRPLLMHYEKEKAQTREGLSFHEWDSEDDDDDNDEEEEERERLREREERGRRG
GRGTVSESERDRARAEDSYSDEGSSGEFGRFERYWEGGAGGSSTGIGGIGGGGWFFGTYP
SREKGGSINSRDDSLLGTRAEGWIGTDFWSSGPGVGWGSEGGSGGLGSQWPPPPAAFPPP
RRYWSMDKIPVKGERKWKNGGGKSKGRARDRGEEAGQATMCSCNLYPQPHPYPHPHSRSH
TSRSKRGTTALSHSQEELLPHCHSFSGGSRPKPLPPKPDPSQAKSGSQSNLSLSLSTQPT
DHPPQPSPSPPQQPSMSPTSLPMPIPPPPSSSSVSPPAGVGMAGQGQAQASASAKLQYQR
LRSVPQPRRFYSPHLPLKAKSLCSRRGSAHFSSLESEV
NT seq
5877 nt
NT seq
+upstream
nt +downstream
nt
atggtcgccatacctactctctctctcctattggtcctggcagagtgggcaggtctggtg
gacgcctcccctcacctcctgctccggcccagcccgcgggagcgtgatgcaggggccatg
atgaacttcaacatcgccgtgatccatgccggtgctacggtgcagacagaggcggcggtg
gcggggcccgggggaagggtgctctaccctggcttcggccgggtatacggctccctgggg
gagagcgtggtcacccagtggggctctgctaacgtcatctggctacaggtgaatgacagt
agtcctaaaacggtgctgtcccagctgtgtgagctgctggcggcgcggcccctgcagggt
ctggtttacgaagaggagaggccccctcgcactgcctggggtcccttggcccccatgctg
gagtttgtctctgcacaaacaggactgcccatagtggctgtaggagggggagcggggctg
gggaggatgccacaggaatcaggttccatctttctccagttcagctcctctactgccctc
cagttagaggtcatctttgaggtgctggaggaatacgattggacggccttttctgtggtg
tacacgcgccaccatggctaccaggacttcctgtctgtggtggagggcctgacggacggc
tcgttcatcggctgggagaagaagagtgtggtgatgctgaacgtgaccgacgaccccggg
ggggcacgcacgcgcaggctgctgaaggagaacgaggcgcaggtacgtttactgtactgc
tcccaggaggaggccgagatgattttccgagccgcctgggccgccggtcaggccggagcc
tcacacatgtggttcgccgtggggccagctctctcaggtttgggcatggagagcctgccc
cgggctctgttcgccgtgcggcctcaggggtggagggacgaacctcgccggaggattgct
cggggtgtgtctgtgctgactcacggggcagtggcaatgcgcaaggattacggaaccacg
ggtgggccgaactttgtcaccaactgcatgacggatgctaatcagacccagagactgcgg
ggcaggatgaggtatttcagcaacatcacgcttggtggtcgagactactccttcaacagt
gatggctacctggcaaaccccttcctggatgtaatctcctggacacctggacgtggatgg
gaagatgtaggctggtgggagaacggcgtgctgaggctacggtacccagcctggtcccgc
tatgggccattccttaaaccacctgatgacgcccagcacctgcgcgttgtcacgctggag
gaaaggccattcgtcattgtggagctggcagaccctgcatccgggacctgcatccgtgac
tcggtaccctgcagacgacctcttaatgccagtgccatccacgagggcgtggctcccatg
aagcagtgctgcaaaggcttctgcattgacatcctcaagagactggccaagattgttgtc
ttcacctatgacctttacttagtgaccaatgggaaacatgggaagaaaattgatggggtt
tggaacggcatggttggagaggtggtatacaagcgagcggacatggccattggctcgctg
actatcaatgaggagaggtcagaggttgtggatttctctgtcccttttgtggagacgggg
atcagtgtcatggtctcccgtagcaacggaactgtctcaccgtccgctttcttagagccc
tacagtccagcggtgtgggtgatgatgttcgtcatgtgcctgaccgtggtggctgtgact
gtctttatttttgagttcttcagccctgtgggctacaaccgcagtctccagaatggcaag
aaggctgggggatccactttcactataggaaagtctgtatggcttttgtgggccattgtc
ttcaacaactctgtgccagtggagaaccccagaggaaccaccagcaagatcatggtgctg
atctgggccttctttgctgtcatcttcctggcctcctacactgctaacctggctgctttc
atgatccaggaggagtacattgacacggtgtcgggcctctcggacaagaagtttcagcat
cccgaggagcagtatccacctctgaagtttggcacagtgcccaatgggagtacagaaaaa
aacatccgctccaactacccagacatgcaccagtacatgggcaaatacaaccagaaaggg
gtggaggacgccatactcaacctcaagaccgggaaactggatgcttttatttatgacgct
gcagtattgaactatatggccaggaaggacgaaggttgtaaggtgatgaccataggctcg
gggaaggtttttgccaccacaggctacggtatcgccctgcacaaaaactcacgctggaaa
cgtcctcttgacctggccctgctgcagctggtgggagatgatgagattgagatgctggag
cgcctctggctgtcaggtatttgccataatgacaaaattgaggtgatgagcagtaaactg
gatattgacaacatggccggggtcttctacatgctgctggtggctatgggcctcagtctt
ctggtgtttgcttgggaacatttggtctattggaagctgcgccactgcatggccaccagt
tctggcaaattagactttctcctggcaatcagcaggggcatgtatagctgttgtagcttt
gaggatgaaactgccccagctaagtctttgcccactcatcaccacaccgcgatggttaca
gtcccatcgcagccacatgttgtctctacgtctatgaccaacccagctattgccatggcg
caacagcagcaaccaccacaacagcagcaaccgcagcccgtctacaaaacacctctaccg
ggctctcctcccaccgtggtgcattctgggacagcactgggtccctccaacacccccatt
gctggtgcacccctcccttgctccaccttcctgccccggccagaccgtagactggctgtg
gtggatcgctggaggctgcccaaaactgctacagctaccaaccctatggctgtaaggggc
accatcactgacatgggaccctttgctcagaaagtcccaccaaactgggcttcaactgct
ggagggggtgggggacttgatggctataagagatactatggtcccattgaccctgaggga
ctggggccctgcatggagcagcaggcagggtcccagacccccaagactatgcctaggggc
cacccccagccacctccagccagtgtggccttctactcagagaagggcatggaccatggg
gtggggaagagggtggtgggaggtggcagtggaggtcaggggaaaggggccgctaaatct
ctgggcactcccagactgcctcctaagagtcaggcccctctgcctcctacacccccactg
ccacacccctctccccctctcccctcatccttctggaggaagcgccggcccaagaagccc
aaagagcctggagggcctttgtacgagaacattctgcccctggggcggaggggaggagca
cgagatggagtgagggagggaggagggaggagggcacgccccctctctcccccgctctca
cttcctgtgccggtacccctcagcccctcctacacccccccttctccatctgcatccttg
cactatacgtcctcgtcctcttcgtcgaccacgtcatccacatccacgtcctcatctgcc
tcatcttctcgctccacctctcccacctactcttacagctcctccaggagcactcgagac
aggactggaggaattgatggagaggatgacgatgacgatgaggagctgacagaagagtca
agcctcctcctcggcagggggagggagagggaacgctcaatcatccgacctcgttccctc
agccacgggcgcctgccaccgcccatacccccgaggaaaccacgcacatcctggggtgac
agagaaagagaacgagagagggagagaggggggagccaactgtctcagctccaagagtgg
tgggcaagctggagtgagagagagaggagtggagcaggtggagatgctgagaggcaaaaa
agggaaaagaagaggagaaaagagaaagagaaagagaagaagaaaaagaaaaagaacaaa
aagaggaaaaagagggaagaaagggaaagagagcgagagagagagaggaagaggcgaaag
gtgaaaaagaagaagaagaaagcactgaagacaaagaaaaggaagaaatcaactggggga
aaacgttctgagcccgaggagggagatattgaggcagatagggaaggagaggtagaggga
gagagggaaggaggaatacaagactacccctccttctctgctcagtatcggagcacattt
ggggagaaagggcgggattcatgggaaggagagagggagagaggcaggagagaaggagat
gaaggcaatgacagggaagaggaggacagtggcagaagcagagagaggcatcccaaatcc
tcacgctctcactccagacatcgtacccccagtaaacgctaccctaacctcaacaaactc
ccagcatcagtcaaattttgggtgaatgggagaggagatgactcaaatactcctccagca
tccctccacccactccttccatcctccaagcggagaagaagtggagggatggacagggaa
gatagtggtcgacttggagagcggcgtcctttgttaatgcattatgaaaaagagaaagca
cagacaagagaagggctgtccttccatgagtgggactctgaagatgacgacgatgataat
gatgaggaggaggaagagagagagaggctgagggagcgggaggaaaggggaaggagagga
ggcagggggacagtgtctgagtcagagagggacagggccagggcggaggacagttactca
gatgagggctcgtcaggggagtttggtcgttttgaaaggtactgggagggaggtgcaggg
ggaagcagcactggaataggaggtataggtggaggtggctggttctttggcacctacccc
tccagagagaaagggggcagtatcaacagtcgagacgattccttactagggactcgagca
gagggatggattggcactgacttctggagttcagggccaggtgtaggttggggatcagag
ggagggagcggagggcttggttcacagtggccgccaccccccgcagccttccctcctcct
agaagatactggtctatggacaagatccctgtgaagggggaaagaaaatggaaaaatgga
ggagggaagagcaaggggagagctagggacagaggggaagaagcaggacaggccaccatg
tgctcctgtaacctttacccccaacctcatccttacccgcatccccacagtcgctcgcac
acctcccgctccaagagaggaaccacagcgctttcccatagccaggaagagcttctcccc
cattgccacagcttcagcgggggctctcgccccaagcctctgcctcccaaaccagatccc
agtcaggccaaatctggcagccaatctaacctcagcctcagcctcagcacacagcccaca
gaccatccaccccagccttcgccgtcgccaccgcagcagccgtccatgtcacccacctcc
ctcccgatgcccatcccgcctccgccttcctcatcctccgtctcgccaccagcaggggta
gggatggcaggccagggccaggcccaggcttcggccagtgccaaactccagtatcagaga
ctgcgttcggtgccacagccacggaggttctactccccccacctgccactcaaagccaag
agcctgtgctcacgtcgaggctcggcccatttctccagcctggagagtgaggtatga
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