Lates calcarifer (barramundi perch): 108887303
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Entry
108887303 CDS
T04895
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108887303 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108887303 (u2af2a)
Spliceosome [BR:
lcf03041
]
Complex A
U2 snRNP components
U2 related factors
108887303 (u2af2a)
Complex B
108887303 (u2af2a)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Transformer
Motif
Other DBs
NCBI-GeneID:
108887303
NCBI-ProteinID:
XP_018538160
UniProt:
A0A4W6D8R1
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Position
LG15:10656738..10665786
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AA seq
480 aa
AA seq
DB search
MSDFDEFERQLSENKQAERDKENRHHRRSSSRSRSRERKRRSRDRDRRSRDRRGDSKERR
HRRSSPSSYPQDNAGSRSPHREKKKKVKKYWDVPPPGFEHITPMQYKAMQAAGQIPATAL
LPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMRLGGLTQA
PGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSEN
PSVYVPGTQTINGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA
TGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKNATLLSFQTSMNQTP
VTLQVPGLNSSVTQMGGLPTEVLCLMNMVAPEELLDDEEYEEIVEDVRDECSKYGQVKSI
EIPRPVDGLEVPGTGKIFVEFTSVFDSQKAMQGLTGRKFANRVVVTKYCDPDAYHRRDFW
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttcgacgaatttgaaagacagctctctgaaaacaaacaagctgaaagggac
aaagagaaccgccaccaccgccggtcctcctcccgcagccgtagcagagagaggaaaagg
aggagcagagacagggatagacgcagcagggaccgccgtggcgacagtaaggagcgcagg
cacagacgcagctcaccatccagctacccccaggacaatgctggaagccgttctccacac
cgtgagaagaagaagaaggtgaagaagtactgggatgtccctccacctggttttgagcac
atcactcccatgcagtacaaagccatgcaagctgcaggccagatcccagccacagccctc
ctgccgactatgactccagatggcctggctgttactcccacacctgtacctgtagtgggc
agccagatgacccggcaggcacgccggctctacgtgggcaatattccctttggtatcaca
gaggagtccatgatggacttcttcaatgcccagatgcgtttgggtggtcttactcaggcc
cctggaaaccctgtccttgcagtacagatcaaccaggataagaattttgccttccttgag
ttccgttcagtggatgaaacaacacaggccatggcttttgatggcatcatctttcaaggc
cagagcctcaagattcgccgtccccacgattaccagccactgccgggcatgagcgagaac
cccagtgtctatgtgcctggtacacagacaattaatggtgtggtgtccacagtggtgcct
gactcggcccacaagctcttcattggcggcttgcccaactacctgaatgatgaccaggtg
aaggagctgttgacgtcattcggccccctgaaggccttcaacctggtgaaggacagtgcc
acaggcttatctaaaggatatgccttctgtgaatatgttgatgtcaaccttaatgaccag
gctattgctgggctgaacggcatgcagctgggagacaagaagctcctggtgcaaagagcc
agtgtgggatccaagaacgccactctgctctccttccagacaagtatgaaccagacccca
gtgacgctgcaggtgccaggtctgaacagctcagtgactcagatgggaggcctgcccact
gaggtgctgtgtctgatgaacatggtggcccctgaggagctgctggacgatgaagagtat
gaggagattgtggaggatgtcagggacgagtgcagcaagtacggccaagtcaaaagcatt
gagatacctcgacccgtggacggcctggaagtgcctgggactggcaagatctttgtggag
ttcacatcagtttttgactcccagaaggccatgcaggggctgacaggaaggaagtttgcc
aacagggtggtggtgaccaaatactgcgatccagacgcttaccaccgccgggacttctgg
tag
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