Lates calcarifer (barramundi perch): 108887345
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Entry
108887345 CDS
T04895
Name
(RefSeq) probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase
KO
K14835
25S rRNA (cytosine2870-C5)-methyltransferase [EC:
2.1.1.310
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcf03009
]
108887345
Enzymes [BR:
lcf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.310 25S rRNA (cytosine2870-C5)-methyltransferase
108887345
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
108887345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
RsmF-B_ferredox
Methyltr_RsmF_N
TRM5-TYW2_MTfase
PCMT
Motif
Other DBs
NCBI-GeneID:
108887345
NCBI-ProteinID:
XP_018538246
UniProt:
A0A4W6DC97
LinkDB
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Position
LG15:complement(10304323..10310624)
Genome browser
AA seq
790 aa
AA seq
DB search
MGRKLDPTNKVKRGPGKKAKKQRGAETELAKFITDEETGPKRLSSRARKRAAKRVQNLKK
PKDVAVEKPKKGFTDENSKWLKPAKRKRKLDEPESEDDSDEHWEEEEDEEEEEEQQQQQQ
QQQKQKKKVGKDQGKKGAKSGVKQVEEEEEEEDDDEDDDDEDEDNDDDDDDDEEMVDDYG
TLDDGSGDEAAEEESDGEDLLPIERAAKKEKKMKETMGLDDDDDDDDDDEEEEEDDDGEG
GDDDEDDEDVDEEDTVQTNIDEMDQFRLPGAEESEKEGILPLDLKTIHQRIKDNIDVLCN
FSTKREEGKERAEYISLLKKDLCTYYSYNNFLIEKLIDLFPLSELVDFLEANEIQRPVTI
RTNTLKTRRRDLAQALINRGVNLDPLGKWSKVGLVIYDSSVPIGATPEYLAGQYMLQGAS
SFLPVMALSPQEGELVLDMSSAPGGKTTYIAQLMRNTGVIVANDANADRLKSVVGNIHRL
GVTNTVVCNYDGRQFPKVMGGFDRVLLDAPCSGTGVIAKDPAVKTSKDEADIQRSAHLQK
ELILSAIDSVNAESPSGGYLVYCTCSIMVEENEWVVDYALKKRNVKLVPIGLDFGKEGFT
RFKERRFHPSLRLSRRFYPHSHNMDGFFVAKLKKFSNVIPTAPAGKEDENSEAPEATEVK
EAPKEKPSNSDKNKTVPSKADGSKQKAQANGTAAKEKANLKSKGKKNSPTGPKKAKVAKM
DGETVKGAEAKKPAVKTTVEIKASKADKKEGSRFEKKEAKNRKSPKKAKNRMGKNKFNKL
KHMLQKQDRV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgggtcggaagttggatcccaccaacaaggtgaagagagggccagggaagaaagccaag
aaacaacggggagcagaaaccgagttggcaaagtttataactgatgaggaaaccggccca
aaacgtctgtcgagtagagccaggaaaagagctgcaaagagagtccagaacttgaaaaag
ccaaaagatgttgctgtggaaaagcccaagaaaggattcactgatgagaacagtaaatgg
ttgaaaccagcaaagaggaagcgcaaacttgatgaacctgaaagtgaggatgacagtgat
gaacactgggaggaagaggaagatgaggaagaggaggaggagcagcagcagcagcagcag
cagcagcagaagcagaagaagaaagtaggaaaagaccaaggaaagaagggtgcaaaatca
ggagtgaaacaggtggaagaggaagaggaggaggaggatgatgacgaggatgacgatgat
gaagacgaagacaacgacgacgacgacgatgatgatgaagaaatggttgacgattacggc
acacttgatgacggcagtggagatgaagcagcagaagaagaaagtgatggagaagacctc
cttcctattgagcgtgcagcaaagaaagagaaaaagatgaaagaaaccatgggtctagat
gatgatgatgatgatgacgatgatgatgaggaggaggaggaagacgacgatggcgaaggt
ggtgatgatgatgaggatgatgaagacgtagatgaggaagacacggtacaaaccaacata
gatgaaatggatcaatttaggctacctggagcagaggagagtgagaaggaaggtatcctg
cctctagacctgaagacaattcatcaaagaataaaagacaacattgacgtcctttgtaat
ttctcaacaaaaagggaggaggggaaagagagagcagagtacatctctctgttgaagaaa
gatctctgcacctactacagctacaacaactttctcattgagaaattaatagacctcttc
cctctctccgagctggttgatttcctcgaggccaatgaaattcagagacctgtcactatt
cggaccaacacactgaaaacaaggaggcgggaccttgcgcaggccctgatcaacagagga
gtgaacctcgatccactggggaaatggtctaaagtgggtttggtgatctacgactcctca
gtacctattggtgcaacaccagagtacctggcaggtcagtacatgctacaaggagcctcc
agttttctgccagtaatggcactttctccacaggagggagaattagttttggacatgagc
tcagctccaggaggcaagaccacctatattgctcagctgatgagaaacacgggggtgatt
gtggctaatgacgctaacgctgacagactgaagagtgtggtgggaaacatccaccgtctg
ggcgtcaccaacactgtggtctgcaactacgatggccggcagttcccaaaggtaatgggt
gggtttgatagagtactacttgatgctccatgctcaggcacaggagtcattgctaaagat
ccagctgtgaagaccagcaaggacgaggcagacatccagcgctctgctcacctgcagaaa
gagctgattctatctgccatagactctgtcaatgctgagtccccctcaggaggatatctg
gtctactgcacatgttcaataatggtggaggagaatgagtgggtggtagactacgcttta
aagaaaaggaacgtcaaattggttcccatagggcttgactttggcaaggaaggcttcacc
aggttcaaagaacgcagattccatccttctctgcgactctcccggcggttttaccctcat
tcccacaatatggatggcttctttgtggccaaactgaagaagttctccaatgtaatacca
actgcaccagcagggaaagaagatgagaattcagaggctcctgaggcgacggaagttaaa
gaagctcctaaggaaaaaccatccaacagcgacaagaacaagactgtccccagtaaggca
gatggctcaaagcaaaaagcccaagccaatggaacagcagccaaggaaaaggcaaaccta
aagtcaaagggcaaaaagaactcacctaccggaccaaaaaaggcaaaggtcgccaagatg
gacggggagactgtgaaaggggcagaggccaagaagcctgcagtgaagaccactgtggag
attaaagcatcgaaggccgacaaaaaggaggggagcagatttgagaaaaaggaggccaaa
aacagaaaatcacccaagaaggcaaagaacagaatgggaaagaataaattcaacaagttg
aagcacatgttgcaaaaacaagacagagtgtga
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