Lates calcarifer (barramundi perch): 108887585
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Entry
108887585 CDS
T04895
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lcf00535
]
108887585
Proteoglycans [BR:
lcf00535
]
Extracellular matrix (ECM) proteoglycans
Others
108887585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_3
DUF4959
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
108887585
NCBI-ProteinID:
XP_018538550
UniProt:
A0AAJ7PTU6
LinkDB
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Position
LG3:21580234..21737598
Genome browser
AA seq
1874 aa
AA seq
DB search
MQFSVRLSLCLLGFVFVSLFPQPARGQVSSPRRFRAKVLSPTKLQVLWKEPKGEFESYKV
IYTTRPGGQQKVVQVSKQEAKLLIEDFDPSKGYEFKIIAVNKGRESKPLQAKHEAQPSAV
ETVQSQRREDSGVTKENNEISEADEGFMCKSPAIADIVILVDGSWSIGRINFRLVRTFLE
NLVRAFSVEFDKTRIGLAQYSGDPRIEWHLNTHTTKEAVIDAVKNLPYKGGNTLTGLALT
FILENSFKPESGSRPGVPKIGILITDGKSQDDVIPPAQSLREAGIELFAIGVKNADENEL
KAIASPPEETHVYNVADFGVMSDIVEGLTSTVCDRVEQLDKQIKGGEPAPPPASVAPPRD
LVTSEITARSFRVRWTHAPGQVEKYRVVYYPASGGQPEEKVVQGTENSVELNYLNSLTEY
QVAVFAVYRSSASEALRGSATTLALPMVNDLELFDITHSTMRVRWKTAAGASGYMILYAP
LTEGDAADEKEVKVADSVNEVELEGLTPATEYTVTVYAMYGEEASDPMTSQQTTLPLTPA
RNLRFSDVEHSSAQLTWDSASRKVKGYRVMYVKTNGVQTNEVDVGRVTTWLLRNLTSLTE
YTVGVFAIYDEGQAEAVTDSFTTKTVPDPLDLRSSDVSTDSFRVSWQHAASDVVLYRLTW
TPTDGGDSEEALVDGNIKTYMIKGLSPATEYEVLLAAIYANEVESDEVILVESTVKRTTT
IATTTTTTAAPRYGVRNLKIDEETTFSMRVSWQPVDARNIRHYRLNYISAKGDRAEETRT
VPTGQNSLVLQPLLSDTEYKVAITPVYPDGDGPTATRMGRTLPLSAPKNLRVSEEWYNRF
RISWDVPPSPTMGYRVVYQPVSAPGAALETFVGEDVNTMLIVNLLSGTEYSVKVIASYTT
GSSDALSGRAKTLYLGVTNLSTYQVRMTGLCAQWQPHRHASAYRVHIESLLNGQKQETKL
SGGTSRHCFNNLKPNTQYKISVYAQLQDGTEGPAVTAVEKTLPVPTPAPTKPPTTTPLPT
IPPAKEVCKAAKADLVFLVDGSWSIGDDNFLKIIRFLYSTTGALDRIGPDGTQVAMVQFS
DDARTEFKLNSYGDKERLLEAINRISYKGGNTKTGRAIQHVKEKIFTAEGGVRRGIPNVL
VVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSDRHVFFVDDLDAF
KKIEEKLVTFVCEAATATCPSIPMSGSTTPGFRMMELFGLVENRYSSVSGVSMVPGTFNT
FPCFHLHSDALLAQPTRFIHPEGLPSDYTITLLFRLLPNTPEEPFALWEILNKNNEPLVG
VILDNGGKTLTFFNNDYKGEFQTVTFEGPEIQKLFYGSFHKLHLAISKTSAKVVIDCKMV
AEKSINAAGNITTDGLEVLGRMVRSRGNKDNSAPFQLQIFDIVCSTSWANRDKCCELPGL
RKEVDCPALPKACTCTQDSKGPPGPAGSPGGPGIRGARGDRGEPGPVGPAGPVGDTGVPG
PQGPPGPQGPSGRSIIGPPGAPGEKGQKGDAGQQGSQGVPGRAGGPGREGPAGSRGLPGK
DGPPGRQGPPGTIGTPGAPGAPGNTGPPGKQGELGPPGPPGSKGEKGERGDLQSTASVQA
IARQVCEQLIQSHMARYNSILNHVPSPPVSVRTVPGPPGEPGRQGAPGPQGEQGPPGRPG
FPGQNGQNGQPGERGQPGEKGEKGSPGVGVQGPRGPPGPPGAQGQGRPGSQGPSGRPGNP
GSPGRPGVPGPIGPAGPPGYCDPNSCVGYNVGEGEDVTDGGAIPAVQLPPNVFQNYGEAE
EDDPYRYYQPNYPAPRPVAPDDPALALDDFELRSPGVHRSVRSLGGEEEEEEEERVGQKR
RLKREVKTPPGLSN
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctcagtcagactgagtctctgcctgctgggctttgttttcgtctctctgttc
cctcagccagcgcggggccaagtttcatcgccgcgaagatttcgtgccaaagtcctgagc
cccaccaaactgcaagtgttgtggaaagagccaaagggagagtttgaaagctacaaagtc
atttacaccacacgaccaggtggacagcagaaggtggttcaggtatcgaagcaggaagca
aaactcctcattgaggactttgacccgtctaaaggatacgaatttaagatcattgcagtc
aataaaggacgggagagcaaacctcttcaggccaaacacgaagctcaaccatcagctgtt
gagacggttcagtcccagaggagggaagacagcggtgtcaccaaggagaacaacgagatc
tcggaagctgatgaggggtttatgtgtaagtctccagccatagccgacatcgtgattctg
gtggacggctcctggagtatcggtcgcatcaacttcaggctggtcaggacgttcctggaa
aacctggtcagggccttttctgtggagttcgacaagaccaggattggcctggctcagtac
agcggagaccccaggattgagtggcatcttaacacacacaccaccaaagaggctgtgatt
gatgctgtgaagaacctgccgtataaaggaggaaacacactgacaggtttggctctgacc
ttcatcctggagaacagcttcaaaccagagtctggatccagacctggcgttcccaagata
ggaatcctcatcactgatgggaagtcccaggatgatgtgataccccctgcacagagcctg
agggaagctgggattgaactgttcgccattggtgtgaaaaacgctgatgagaatgagctg
aaggccatcgcctctcctcctgaggaaactcacgtctacaacgtggcagactttggtgtg
atgagcgacattgttgaaggtctcacctcgaccgtgtgcgaccgagtggagcagctcgac
aagcagatcaaagggggagaacctgcccccccgcccgcctctgtagctcccccccgggac
ctggtgacgtccgagatcacagctcgcagttttcgggtgagatggacccacgcaccgggt
caggtggagaagtacagagtggtgtactaccccgccagtggaggacagccagaagagaag
gtggttcagggcacggagaacagcgtggagctgaactacctgaactctctgacagagtac
caggtggctgttttcgccgtctaccgcagctctgccagtgaggccctgagaggaagtgct
accacattggccctgcccatggtgaacgacctggagctgtttgatatcactcacagcacc
atgagggtccgctggaagaccgctgctggggcttctgggtacatgatcctttacgccccg
ctgaccgagggggacgccgcagacgagaaggaggtgaaggtggcagactcggtgaatgag
gtggagctcgaaggattgactccggccactgagtacacagtgacagtttacgccatgtat
ggagaggaggccagcgaccccatgaccagccagcagaccacattgccgctgaccccggcg
aggaacctgcgtttctcagacgtggagcacagctccgcccagctgacatgggactctgct
tccaggaaggtcaaaggttaccgcgtcatgtacgtcaagaccaacggagtccagaccaat
gaggtggatgttggccgtgtgaccacatggttgctgaggaacctgacctctctgacggag
tacacagttggtgtttttgccatctacgacgaggggcaagctgaggctgtgactgacagt
ttcactacaaagactgtcccagacccactggatctgaggagcagtgacgtctctacagac
agcttcagggtgtcatggcaacacgcggcctcagatgtggtgctgtaccgactcacctgg
acgcccaccgatggaggagacagcgaggaggctctggtggatggaaatattaagacctac
atgatcaaaggactcagtcctgccacagagtacgaggtcctcctggctgccatctatgca
aatgaggttgagagtgatgaggtgatcctcgtagagtccacagttaaaagaacaaccacc
atcgctacgacaaccaccaccacagcagctcctcgttacggggtgaggaacctgaagatt
gatgaggaaaccaccttcagtatgcgcgtgtcctggcagcctgtcgacgccagaaacatc
cgacattatcgactgaactacatcagcgccaagggagaccgagcggaggagacgaggacg
gtgcccaccggacagaacagcctggtcctgcagcctctgctgtcagatacagagtacaaa
gttgccatcactcctgtttacccagatggagacgggccgacggcgacacgaatgggacga
acgcttcctctctcagctcctaagaacctgagagtatcggaggagtggtacaaccgcttc
aggatcagctgggacgtcccaccttcacccaccatgggctacagagtcgtctaccagcct
gtatctgcccctggagcagctctggagacttttgtgggggaggacgtgaacaccatgctg
atagtcaacctgctgagtgggactgagtacagtgtcaaggtcattgcctcctacaccact
gggtccagtgatgccctctcagggagggccaagaccttgtacctgggggtgactaacctg
agcacatatcaggtgaggatgaccggtctgtgcgcccagtggcagcctcaccgacacgcc
agcgcctacagagtgcacatcgagtccctgctcaatggtcagaagcaggagacgaagctg
agcggaggaaccagcagacactgtttcaacaacctgaagcccaacacacagtataagatc
agtgtgtacgctcagctgcaggacggcactgaaggacctgcagtcactgctgttgaaaag
acactacccgtcccgaccccggcgccgaccaaaccccccaccaccaccccgctacccaca
atccccccggccaaagaagtctgtaaggcggccaaagctgacctggtcttcctggttgat
ggttcctggagcatcggtgatgacaacttcctgaagatcatccgcttcctgtacagcacc
accggagctctggacaggatcggcccggatggcacgcaggtggctatggtccagttcagt
gacgacgcccggaccgagtttaagctgaactcatacggcgacaaggagcgactgctggag
gccatcaacaggatctcttacaagggaggaaacaccaagacgggtcgagccatccagcat
gtgaaggaaaaaatcttcacggcggagggaggagtcaggagaggaatccccaacgtcctc
gtggtcctcacagacggtcgatcccaggacgatgtcaacaaagtttccaaggagatgcag
atggaaggttacattgtgtttgctatcggctttgctgacgctgactacggcgagctggtg
agcatcgccagcaaacccagcgacagacacgtcttcttcgtggacgacctggacgccttc
aagaagatcgaagagaagctggtgacctttgtgtgtgaagctgccactgccacttgtcca
tcgattccaatgagcggcagcacaacaccaggtttccggatgatggagctgtttgggctg
gtggagaatcggtacagtagcgtctctggcgtttccatggtacctggcaccttcaacacc
ttcccctgcttccacttgcacagtgacgcactgctggcacagccaaccaggttcatccat
cctgagggccttccctctgactacaccatcaccctgctgttcagactgctgcccaacacg
cctgaggagccctttgccctctgggagatcctcaacaagaacaacgagccgctggttgga
gtcatcctggacaacggaggaaagactctgacgttcttcaacaacgactacaaaggagag
tttcagacggtgacctttgagggtccagagatccaaaagctcttctacggcagcttccac
aagcttcacctcgcgatcagcaagacaagcgccaaagttgtgattgactgcaaaatggtg
gcagagaaatcgatcaacgcagcgggaaacatcaccacagatggactggaagttctgggc
cggatggttcgctcccggggcaacaaggacaactctgcaccgttccagctgcagatcttt
gacatcgtctgcagcacttcctgggccaacagagacaagtgctgcgaactgcctggtctg
aggaaggaggtagactgcccggccttacccaaagcctgcacctgtacccaggacagcaaa
ggcccccccggccctgccggatcaccaggaggcccaggaatcagaggagccagaggtgat
cgtggagagccaggccctgtggggccagctggtccagtaggtgatacaggtgtaccagga
cctcagggacccccaggaccacaaggacccagtggacgctccatcattggacccccaggt
gcaccaggagagaaaggacagaaaggtgacgctggacaacaaggatcacagggagttcct
ggtcgagctggaggtccaggcagagagggacctgcaggatccagagggctgccaggaaaa
gacggccccccgggcagacagggccccccaggaacaatcgggactccaggagccccaggg
gccccaggaaatacaggtcctccaggaaaacaaggagaactgggcccaccgggtcctcct
ggaagcaagggggagaaaggtgaacggggtgacctccagtcgacagcatcggttcaggcc
atcgccaggcaggtctgtgagcagctgatccaaagccacatggctcgctacaactccatc
ctgaaccacgtacccagtccaccggtgtccgtccgcactgtgcctggaccccccggagag
cccggccggcagggagccccagggccccagggagaacagggacccccaggaagacctggc
ttcccgggacagaacggacagaacggccaacctggagaaagaggtcaaccaggagagaag
ggtgagaagggatctccaggggtcggggtccaaggccccagaggacctccaggaccccct
ggtgcccaaggtcagggcagacccggcagccagggtccatcagggcgacccgggaatcct
ggatctcccggtcggcctggggtccccggacccatcggccccgcggggcctccaggatac
tgcgacccgaactcctgtgtgggctacaacgtcggagagggtgaggatgtcactgacggc
ggcgctatccccgcagtccaactgccgcccaacgtcttccagaactacggcgaggccgag
gaggacgacccctaccgctactaccagcccaactacccggccccacggcccgtggcgccc
gacgaccccgccctcgccctggacgacttcgagctgaggtcccccggcgtccaccgcagc
gtgcggagcctgggaggggaggaggaggaggaggaggaggagagagtcgggcagaagagg
agactaaagagagaagtgaagacgccacctggactatctaactga
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