Lates calcarifer (barramundi perch): 108887634
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Entry
108887634 CDS
T04895
Name
(RefSeq) collagen alpha-1(VII) chain
Organism
lcf
Lates calcarifer (barramundi perch)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108887634
NCBI-ProteinID:
XP_018538607
UniProt:
A0AAJ7V714
LinkDB
All DBs
Position
Unknown
AA seq
1432 aa
AA seq
DB search
MFELYGSWAFVCGVIWSYAVYSVECDVQLCVRGQLEGARGFPGVKGVKGEQGKIGPVGPI
GPPGARSVEPGPKGSPGAVGQPGKPGLPGDPGRPGKEGDAGKRGDMGDRGEKGDQGEAGK
MGPAGPSGPKGDEITGPRGDRGSPGLAGEKGEPGAAGPTGPRGDRGETGTKGEKGLPGSP
GTTGERGPLGEKGNTGDKGAAGIKGQRGAAGEQGEPGKDGAQGSPGSKGDKGEKGIGQSG
PPGLVGPPGLKGDPGLPGEAGPPGLQGKTGDRGLPGQRGETGQPGPPGQVGDKGLQGFPG
PAGNVGAPGPPGEAGEDGLPGLNGEKGSTGDSGPKGEKGVKGQDGAQGEQGLKGEPGERG
LTGAQGDRGPDGQRGAQGSPGSKGDKGEKGVGQSGPPGLVGIRGLKGDPGLPGEAGPPGL
QGKTGDRGLPGQRGETGQPGPPGQVGDKGLQGFPGPAGNVGAPGLPGEAGSPGTDGAKGD
KGQDGVGVPGSKGERGEQGPRGEDGLPGSDGEKGSTGDSGPKGVLGEKGVKGQDGAQGEQ
GLKGEPGERGLTGAQGDRGPDGQRGANGLPGERGEKGEQGEIGPVGPKGPPGARSVEPGP
EGPRGLAGEPGSQGLPGVPGEPGKDGDAGKQGVKGDRGEKGDQGEAGKMGPAGPSGPKGD
GITGPQGDRGPPGEAGQTGPRGDRGEKGIGQSGPPGLVGPPGLKGDPGLPGEAGPPGLQG
KTGDHGLPGQRGETGQPGPPGQVGDKGLPGSPGTTGERGPLGEKGNTGDKGAAGIKGERG
AAGEQGEPGKDGAQGSPGSKGDKGEKGIGQSGPPGLVGPPGLKGDPGLPGEAGPPGLQGK
TGDRGLPGQRGETGQPGPPGQVGDKGLPGSPGTTGERGPLGEKGNTGDKGAAGIKGERGA
AGEQGEPGKDGAQGSPGSKGDKGEKGIGQSGPPGLVGPPGLKGDPGLPGEAGPPGLQGKT
GDHGLPGQRGETGQPGPPGQVGDKGLPGSPGTTGERGPLGEKGNTGDKGAAGIKGERGAA
GEQGEPGKDGAQGSPGSKGDKGQKGVGQSGPPGLVGTTGLKGDPGLPGEAGPPGLQGKTG
DRGLPGQRGETGQPGPPGQVGDKGLPGSPGTTGERGPLGEKGNTGDKGAAGIKGERGAAG
EQGEPGKDGSPGTDGAKGDKGQDGVGVPGSKGERGEQGPRGEDGLPGLNGEKGPTGPPGV
RGLQGEKGEIGLRGDKGEKGLSGEPGERSIGVPGTRGPGGQKGDRGSKGECGDPGLKGKQ
GEPGINGRPGKAGQQGKQGAIGHFGVPGIPGKEGLVGPKGDRGFDGIPGQRGPQGEKGER
GIGVPGSPGPSGVQGPPGNPGPLGLIGAKGPEGLQGQKGERGPIGPTMIGPRGIPGIPGE
RGEPGEVGPEGAKGDRGVPGMTEDEIREYVRSEMSRLRGESFMQPELLIYDY
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaattgtatgggtcgtgggcatttgtatgcggggttatttggtcatatgcggtg
tactcggtggaatgtgatgtccaactctgtgtccggggacagcttgagggtgcccgtggt
tttccaggagtgaagggagtaaaaggggagcaaggaaagattggacctgtgggaccaata
gggcctcctggagcacgcagtgtagaaccaggaccaaaggggtccccaggggctgttgga
cagccaggcaagccaggattaccaggtgatcctgggagacctgggaaagagggtgatgct
ggaaaacgaggagatatgggggacaggggagagaaaggcgaccaaggagaagctggaaaa
atggggccagctggtccatcgggtccaaagggagatgaaataacaggtccacgaggggac
agaggctctccagggcttgcaggagagaagggagagcctggtgcagcaggaccaacagga
cccagaggagaccggggagagactggaaccaaaggagagaagggtctacctggttctcca
ggcacgactggagagagaggtccacttggggaaaagggtaacacaggagacaaaggtgct
gctggcattaaaggacaaagaggagcagctggtgaacaaggagagcctggaaaagatggg
gcacagggatctcctgggtctaaaggagataagggagagaagggcataggacagtcaggt
cctcctggtctggtcggccctcctggtttaaagggggatcccggccttcctggtgaagct
ggtcctccagggctccaggggaagactggtgatcgcgggctgcctggccagagaggagaa
actggacaaccaggacctccaggacaagtgggagataagggtcttcaaggctttccaggc
cctgcaggaaatgttggagctcctggacctcctggagaggccggcgaggacggtcttcct
ggattgaatggagagaaagggtcaacaggtgacagtgggcccaaaggagaaaaaggggtg
aagggtcaagatggagcacaaggggagcagggtctgaaaggagagccaggagaaagagga
ctgactggagcccagggtgaccgtggccctgatggacagaggggggcacagggatctcct
gggtctaaaggagataagggagagaagggcgtaggacagtcaggtcctcctggtctggtc
ggcattcgtggtttaaagggggatcccggccttcctggtgaagctggtcctccagggctc
caggggaagactggtgatcgcgggctgcctggccagagaggagaaactggacaaccagga
cctccaggacaagtgggagataagggtcttcaaggctttccaggccctgcaggaaatgtt
ggagctcctggacttcctggagaagcaggctctcctggtacagacggggccaaaggagac
aaggggcaagatggtgttggtgtccctggttccaaaggagagagaggagaacaagggccc
agaggcgaggacggtcttcctggatcagatggggagaaagggtcaacaggtgacagtggg
cccaaaggtgtgctgggagaaaaaggggtgaagggtcaagatggagcacaaggggagcag
ggtctgaaaggagagccaggagaaagaggactgactggagcccagggtgaccgtggccct
gatggacagaggggtgccaatggtttaccaggagagaggggagaaaaaggggaacaagga
gagattggacctgtgggaccaaaggggcctcctggagcacgcagtgtagaaccagggcca
gaggggccccgagggcttgctggagagccaggcagtcaaggattaccaggtgttcctggg
gaacctgggaaagatggtgatgctggaaaacaaggagttaagggggacaggggagagaaa
ggtgaccaaggagaagctggaaaaatggggccagctggtccatcgggtccaaagggagat
ggaataacaggtccgcaaggggacagaggcccccctggtgaggcaggacaaacaggaccc
agaggagaccggggagagaagggcataggacagtcaggtcctcctggtctggtcggccct
cctggtttaaagggggatccaggccttcctggtgaagctggtcctccagggctccagggg
aagactggtgatcacgggctgcctggccagagaggagaaactggacaaccaggacctcca
ggacaagtgggagataagggtcttcctggttctccaggcacgactggagagagaggtcca
cttggggaaaagggtaacacaggagacaaaggtgctgctggcattaaaggagaaagagga
gcagctggtgaacaaggagagcctggaaaagacggggcacagggatctcctgggtctaaa
ggagataagggagagaagggcataggacagtcaggtcctcctggtctggtcggccctcct
ggtttaaagggggatccaggccttcctggtgaagctggtcctccagggctccaggggaag
actggtgatcgcgggctgcctggccagagaggagaaactggacaaccaggacctccagga
caagtgggagataagggtcttcctggttctccaggcacgactggagagagaggtccactt
ggggaaaagggtaacacaggagacaaaggtgctgctggcattaaaggagaaagaggagca
gctggtgaacaaggagagcctggaaaagacggggcacagggatctcctgggtctaaagga
gataagggagagaagggcataggacagtcaggtcctcctggtctggtcggccctcctggt
ttaaagggggatccaggccttcctggtgaagctggtcctccagggctccaggggaagact
ggtgatcacgggctgcctggccagagaggagaaactggacaaccaggacctccaggacaa
gtgggagataagggtcttcctggttctccaggcacgactggagagagaggtccacttggg
gaaaagggtaacacaggagacaaaggtgctgctggcattaaaggagaaagaggagcagct
ggtgaacaaggagagcctggaaaagacggggcacagggatctcctgggtctaaaggagat
aagggacagaagggcgtaggacagtcaggtcctcctggtctggtcggcactactggttta
aagggggatccaggccttcctggtgaagctggtcctccagggctccaggggaagactggt
gatcgcgggctgcctggccagagaggagaaactggacaaccaggacctccaggacaagtg
ggagataagggtcttcctggttctccaggcacgactggagagagaggtccacttggggaa
aagggtaacacaggagacaaaggtgctgctggcattaaaggagaaagaggagcagctggt
gaacaaggagagcctggaaaagatggctctcctggtacagacggggccaaaggagacaag
gggcaagatggtgttggtgtccctggttccaaaggagagagaggagaacaagggcccaga
ggcgaggacggtcttcctggattgaatggagagaaagggccaacaggtcccccaggggtc
cgtgggcttcagggagagaagggtgaaattggactgcgaggtgacaaaggagagaagggt
ctgagtggagagccaggagaaagatccattggcgtcccaggcacccgaggccctggtgga
cagaagggtgaccgaggatccaagggggaatgtggagaccctggactcaaaggcaagcag
ggggaacctggtattaatggacgaccaggcaaagcaggacaacaaggtaaacagggagct
atcggacatttcggtgttcctgggatccctggaaaagaggggctagtcggccctaagggt
gaccgtggttttgacgggattccaggacagagaggacctcagggagagaaaggtgaaagg
ggtattggtgtacctggctctcctggtcccagtggagtgcaggggccccctggcaatcct
ggccctctaggactaattggtgctaaagggcctgaggggcttcaaggacagaagggagag
agagggccaatcggtcccaccatgattggtccacgtggtatcccaggtatcccgggagag
agaggagaaccgggagaagtgggtccagagggagccaagggagacagaggagtaccaggc
atgacagaggatgagatcagagagtatgttcgctcagagatgagtcggctccgtggtgag
tctttcatgcagcctgaattgctaatttatgactactga
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