Lates calcarifer (barramundi perch): 108887664
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Entry
108887664 CDS
T04895
Name
(RefSeq) cadherin-15
KO
K06809
cadherin 15, M-cadherin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecule (CAM) interaction
lcf04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
108887664
04519 Cadherin signaling
108887664
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108887664
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Major cadherins
108887664
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_FAT4_N
Ig_CLSTN
Motif
Other DBs
NCBI-GeneID:
108887664
NCBI-ProteinID:
XP_018538661
UniProt:
A0A4W6CIX8
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All DBs
Position
LG2:complement(3750880..3766292)
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AA seq
802 aa
AA seq
DB search
MAVRMLMVCVLGTLLGQVWSSAKLHHNEEELHTQALYPWRSQGHGLVRMKRDWIIPPIRV
LENSKQVPEDLVQIKSDKIFTGEVIYKLEGPGVDQEPKNLFEIDDKTGVIRSKRPLDREK
YSSFTLKAFALSPSGERLENPTTIEIMVLDQNDNRPAFTQSQFVGTVSEFSVPGTSVMSV
SATDADDPMTENAALSYSIIGQESIPANTVTKTMFGINNQTGAIYTRDVGLDREVVKGFR
LKLQVADMGGMGLTSEGVAIIHVSDINNHAPQFSPPLYSMTAVENRQEYEIGRVNVTDRD
DRGTGNWEAKYSITNDPEGNFAITTDPSTNQGVLTVVKPLDYEAQSEYVLILTVENVNTL
SNKAPNLPVSTATVLVTVVNENEAPRFREDPIQIVVPESVVPGTLLKSNIAFDPDNSDLR
YEISRDPERWLDIDRDTGDIMARRTFNMRSPHVKNHIYTAVVKVTDAGGVSTTATAAITL
KETNDFPPQLFPLSGSVCRDTGRMNSGLVVTAVDEDFPPHAAPFIFEMPDYLSVNWTVVQ
VNDTHALLQPLVELEAGEYAVTVLVSDSGSPVLSAFTQVNITVCLCDSFGDCKSEAGAII
GSSVGISFIALIIIMASIALLLLLLLLAVAVTACGRRHHIKKGTGLLVGESEDDIRDNVL
NYDEQGGGEEDENAFNIDMLWNPHDAPPAPGSYYPGSGVPRGKQPLRKDAPHNLPSPIYP
RRPPADPTDIEDYINDGLEAADNDPNVPPYDTALIYDYEGEGSLAGSLSSIASGSSDGDQ
DYDYLNDWGPRFQKLANMYDPR
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggcggtacggatgttgatggtgtgtgtgctgggtactctgctgggtcaggtgtggagc
tctgcaaaacttcatcacaatgaggaagagctgcacacgcaggccctttacccctggaga
agccaaggccatggattggtcaggatgaagagggactggatcatccctccaatcagagtg
ctggagaatagcaagcaggttcctgaggaccttgtccagatcaaatcggacaaaatcttt
acaggtgaagtgatctacaagttagagggcccaggggtggaccaggagcccaagaatctg
tttgagattgatgataaaacaggagtaatcaggagcaagcggccgctggacagagagaaa
tacagcagtttcacactgaaagcttttgcgctgtcccccagtggagagagactagagaat
cctaccaccatagagataatggtgctggatcagaatgacaacagacccgccttcacccag
agccagtttgttggcactgtctctgagttctcagtcccaggcacatcagtgatgtcagtt
tcagccacggatgcagatgacccaatgacagaaaacgctgctctgagctactctatcatt
ggccaggagagcattcctgccaacactgttaccaagactatgtttggtattaacaaccag
acaggagccatctacacaagagacgtaggcctggacagagaggtggtgaaaggcttcaga
ttaaaactacaggttgctgatatggggggcatgggactaacaagtgaaggtgtagcaatc
atacatgtatctgatatcaacaaccatgccccgcagtttagccctcccttgtacagtatg
acagcagtggagaacaggcaggaatatgagattggccgggtgaatgtgacagacagagat
gatcgtggaacaggaaactgggaggccaagtactccatcaccaatgatcctgagggaaac
tttgccatcactacagatccctccaccaaccagggcgttctgacagtggtgaagcccctg
gattatgaagcacagagtgagtacgtcctgattctgacagtggaaaatgtcaatactctg
agcaacaaggctcctaacctcccagtgagcaccgctacagtgttggtcactgtcgtgaat
gagaatgaagctccacgcttcagagaagaccccatacagattgtggtccctgagtctgtg
gttcctgggacgctactgaaaagcaacattgcctttgaccctgataattctgacctgaga
tatgagattagcagagatcccgagagatggctggacatcgacagagatacaggagacatt
atggccaggagaaccttcaacatgcgatctccacatgttaaaaaccatatctacactgct
gttgtgaaggttacagatgctggtggtgtgtcaaccacagccacagccgccatcactctg
aaggaaaccaatgacttcccccctcagctctttcctctgagcggctctgtatgcagggat
acaggccggatgaattctggtctggtcgtgactgctgtggatgaagactttcctccgcac
gctgcgcccttcatcttcgaaatgcccgattatctgtcagtcaactggactgttgttcaa
gtcaatgatactcatgctctgctccagccccttgtagagctggaggcaggagagtacgcg
gtcacagtgctggtgtcagattccggcagcccagttctgagtgcttttactcaggtcaac
attactgtgtgtctctgtgactccttcggggactgtaagtctgaggcgggggcaatcata
ggctccagtgtgggaatcagcttcatcgcgctcattatcatcatggccagtattgcactc
ctactgttgctgctcctcctggctgtggcagtgaccgcctgtgggagacgccaccatatc
aagaaaggaacaggtctgcttgttggggaatcagaagatgacatccgtgacaatgtcttg
aactatgatgagcaaggagggggtgaggaggatgagaatgcctttaacatcgacatgctg
tggaatccccatgatgcacctccagccccgggatcctactacccagggtctggtgttcct
cgaggcaagcagcccctcaggaaggatgccccacataacctgccctcccctatctaccca
aggaggcctcctgcagatcccactgacatcgaggactacatcaatgatggcctagaagct
gcagacaatgatcctaacgtgcctccatatgacacagccctgatctatgattatgagggt
gagggctcactggcaggcagccttagctccattgcgtcaggcagctctgatggagaccag
gactacgactacctcaacgactggggaccacgctttcagaaactggccaacatgtacgac
ccacgttaa
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