Lates calcarifer (barramundi perch): 108887686
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Entry
108887686 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: collagen type XVIII alpha 1 chain a
KO
K06823
collagen type XVIII alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108887686
00535 Proteoglycans [BR:
lcf00535
]
108887686
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108887686
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108887686
Proteoglycans [BR:
lcf00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
108887686
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108887686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
DAG1
Motif
Other DBs
NCBI-GeneID:
108887686
NCBI-ProteinID:
XP_018538689
UniProt:
A0AAJ7PU31
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All DBs
Position
LG1:complement(9115836..9174168)
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AA seq
1347 aa
AA seq
DB search
MKMRCCSWLERLVCCVLLLVSPAASQWPEDSGVSLLHLIGDPPPSEITQVYGPDNSPGYV
FGPNANTGQLARAHLPSPFYRDFALIFNLKPTSDGGGVIFSITDASQQIMYVGVKLSEVQ
GGNQNVILYYTEPDSQQSYEAARFLVPSMRDTWTRFAIAVRDDKVMFYLNCDTDPQVMRI
ERSPDEMELETGAGVFVGQAGGADPEKFLGVIGELRVVGDPRAAERHCEEDEDDSDMASG
EGSGDEETRLSKPAVEKHRWTTTPPSSRPIQQPPLTRKEEVSIARETGPVGAKGERGDRG
EKGEKGDRGPIGPKGESGSGSSSRGGARGEKGEPGEKGAKGSAGFGYQGKKGDPGPPGPP
GPPGPPGLATEISLGGDGSVVSRVPGPRGPPGPQGVPGSPGADGEPGDPGEDGKTGPEGP
PGFPGTPGDTGPKGEKGDRGEGQPGPRGPPGPPGPPGTGFRSTFVDMEGSGFPDLESIRG
LPGLPGVPGPPGPPGPPGPSTASTASSSGAFGPPGKDGAPGQPGLPGLPGTDGLPGAPGP
KGEKGDTGELGLPGAVGEKGAQGEPGLPGPSGEPGLAGLPGPIGPVGPPGPPGPPGPSYR
VGFDDMEGSGGGFTNGLPGVRGPEGRQGPPGLPGLPGKPGLPGILGPKGNEGPVGRDGRP
GLDGFPGPQGPKGDRGDKGERGEAGRDGTGLPGPPGPPGPPGQIIYSSDNFDGVVGSVRP
QGGPGLPGQAGFPGPMGPKGDRGDPGLPGYGVKGEKGEPGLVIGPDGNLLHLDGLRGQKG
DRGPAGPVGPSGQYGPPGLKGEIGMPGRPGRPGVNGYKGEKGEPGGGAGYGYPGPPGPPG
PPGPPGPAIPIDRFNRYDETSRNYPVTKGEKGERGERGLPGIPGTASNFDIYAFKNELKG
ETGDPGVKGEKGEPGGGYYDPRFGVQGPPGPSGKPGLPGPKGDSIVGPPGPQGPPGPPGV
GYDGRPGPPGPPGPPGSPGSLPGVYRPNHPVSVPGPPGPPGPPGSPGLSSGVTVLRSYDT
MIASARRQAEGSLVYIIDRADLYLRVRDGLRQVMLGEYRPFFRDLENEVAEVQPPPVVLY
PESRDQSQNNGAGHYSQSGSAIRPIEPPPHPPVDPRYPPQYDPRFPDPRHTGHTDGRLAT
PHTENRYPVTPQRRPSPPVPQPGGHVDTSGSGLHLIALNAPQTGNMRGIRGADFLCFQQA
RAVGLKGTFRAFLSSKLQDLYTIVRRSDRDSFPILNLKDQVLFSSWESMFGDDASKMKEN
VPIYSFDGRDILRDSAWPEKMVWHGSNNKGHRQTDHYCETWRAGERAVTGLASSLQSGHL
LQQTSSSCSGSYIVLCIENALISHSKK
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaggtgttgttcatggctggagcgccttgtctgctgcgtccttctcctcgtc
agcccggcggcatcgcagtggccagaagacagtggagtctccctgctgcatctgattgga
gatcctcctcccagtgagattacccaggtctacgggcccgacaacagtcccggatatgtc
ttcggccccaatgccaacacaggccagctggcgcgtgcccacctgccgagcccgttctac
cgagactttgccctcatcttcaacctgaagcccacctctgacgggggtggagtcatcttc
tctatcacagacgcctcacagcagatcatgtacgtgggcgttaaactgtcggaggtgcag
ggcggcaaccagaacgtcatcctgtactacacagagcctgactcacagcagtcgtatgag
gcagccaggttcctcgtgccctccatgagggatacctggacgcgtttcgccatcgccgtg
agggatgacaaggtgatgttctacctcaactgtgacacagaccctcaggtgatgcgcatc
gagaggtccccggatgagatggagctggagactggtgctggggttttcgtcgggcaggct
ggaggagctgatccggagaagttcctgggggtgatcggtgagctgagggtggtgggagac
ccccgtgctgctgagagacactgtgaagaggatgaggatgactccgatatggcttcaggt
gaaggaagtggtgatgaggagacaagactctcaaaacccgctgtggagaaacatagatgg
acgactactcctccatcctctcggccgatccagcagccaccactgaccaggaaagaggag
gtgtccatcgcaagagagacaggaccggttggggctaaaggagagcgaggtgaccgaggg
gaaaaaggagagaaaggagacaggggtccaatcgggccgaagggagaatcaggctctggc
tccagctcacgaggtggagcccgtggagagaagggagaaccaggggaaaaaggagcaaag
ggcagtgcaggttttggctatcaaggaaagaagggtgaccccggaccccctggaccccct
ggccctcctggccctccagggcttgcaactgaaatctcacttggtggtgacggctcagtt
gtttcgagagtccccggaccccgaggaccacctggaccacaaggtgtcccaggatcacca
ggagctgatggagagccaggtgatcctggagaggatggaaaaactggtcctgaaggacct
ccaggtttcccaggaactccaggagacactggacccaagggagagaagggagaccgtgga
gagggtcagcctggccccaggggacctccagggcctccaggacctccaggaacaggattc
agatctacttttgtggacatggaaggttcagggttccctgacctggaatctattcgggga
ctgcctggactgcctggagtgccgggtccccccggtccccccgggcctcctggtccctct
acagccagcacagcatccagctctggggcatttggaccaccaggaaaggatggggcgccc
ggtcaacctggcttgcctggtttaccgggtaccgatggcctcccaggagctcctggtccc
aagggagaaaagggcgatacaggcgagctgggtcttccaggagccgttggagagaaggga
gctcaaggagaacctggtttacctggaccttcaggagagcctggactcgctggtctgcct
ggacccatcggaccagttgggccacctgggcctcccgggcctcctggaccaagttatcgt
gttggatttgatgacatggagggctctggtggaggcttcaccaatggacttcctggtgtc
agaggcccagaaggaagacagggtcctcctggtttacctggacttccgggtaaacctggg
ctgcctggcatactgggtccgaagggcaacgagggtcccgtaggaagagatggacgacct
gggctggatggcttccctggtcctcagggaccaaagggagacagaggtgacaaaggagag
aggggtgaagcaggtcgagacggaaccggactcccgggtccaccaggtccacctggacca
ccaggacaaatcatctactcatctgacaattttgacggagtcgtcggcagtgtcaggcct
cagggtggacctggtttacctggtcaggctggattccctggacctatgggaccaaagggg
gacagaggagatcctggtcttcctggctacggagtgaagggtgagaaaggcgagccaggc
ttagtgatcggacctgatggaaatctgctgcatctggacgggttaagaggtcagaaggga
gaccgaggacctgctggacctgttggtccctctggtcagtatggacctcctggattaaaa
ggtgaaattggaatgcctggacgacctggtcgtcctggtgtgaatggatacaagggtgag
aaaggagagccgggaggtggtgctggatatggctacccaggcccacctggaccaccagga
ccacctggaccccctggtccagccattcctatagatcgcttcaatcgctacgatgaaacc
tcaaggaattatccagtgactaaaggggaaaaaggagagcgtggcgagcgaggacttcca
ggaatcccaggaacggcgtctaactttgatatttacgcgttcaagaatgaactgaaagga
gaaactggagatccaggtgtgaagggagagaagggagagcccggtggtggatattatgac
ccacgtttcggagtccaaggtccaccaggaccttctggaaaaccaggtttaccgggtcca
aagggagattccattgtgggccctcctggacctcagggaccaccggggccaccaggcgtt
ggttatgatggacgtccaggtcctccaggaccacctggacctccaggatctccaggctca
cttcctggagtatacaggcccaatcaccccgtcagtgtcccaggacctcctggtcctcct
ggcccacctggaagtcctggtctctcctctggagttacagtgctgagatcgtacgacaca
atgatcgcttctgccagacgtcaggcagagggcagcctcgtctacatcatagaccgggca
gacctctacctgagagtgcgcgatggactgcggcaagtcatgctcggagagtacaggccc
ttcttcagagatctggagaacgaggtggcggaggtccagcctcctcccgtggtcctgtac
cccgagtcccgggaccagtcccagaacaacggcgctggccattactcccagtctggttct
gccatacgtcccattgagcctccaccacacccgcccgtggaccccagataccccccgcag
tacgatcccaggttcccggatccgagacacacgggtcacacagacggacgattagccacc
ccacacactgagaacagatacccggtcaccccacagaggcgacccagccctcctgtcccg
cagcctggaggccacgtggacacgtcaggatctggactacacctcatcgccctgaacgcc
cctcagaccggtaacatgcgaggaatccgcggggctgacttcctgtgcttccagcaggct
cgtgccgtgggcctgaagggaaccttcagagccttcctgtcctctaagcttcaagacctc
tacaccatcgtccgcaggtcggacagggacagcttccccatcttgaacctcaaggaccag
gtgttgttcagcagctgggagtcgatgtttggtgacgacgcgagcaaaatgaaggagaac
gtgccgatctactccttcgatggtcgagatatcctcagggacagcgcatggccggagaaa
atggtctggcacggatcaaacaacaaaggccaccggcaaacagaccactactgtgaaacg
tggcgagcgggcgagcgcgctgtgactggtctggcgtcatcgctgcagagcggccacctc
ctgcagcaaacctccagcagctgctccggctcctacatcgtcctctgcatcgagaacgcc
ctcatatcacactccaaaaaataa
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