Lates calcarifer (barramundi perch): 108887821
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Entry
108887821 CDS
T04895
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03420
Nucleotide excision repair
lcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108887821
09124 Replication and repair
03420 Nucleotide excision repair
108887821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108887821
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108887821
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
108887821
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
108887821
TCR (transcription coupled repair) factors
Cul4-CSA complex
108887821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
108887821
NCBI-ProteinID:
XP_018538922
UniProt:
A0AAJ7PUB1
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All DBs
Position
LG2:complement(9547157..9592442)
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QDSKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQISTTEMEHEVAC
LDITPLGEAGSESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaattacgtggtaacagcccagaaacccacggcagtgaacgcctgcatcacc
ggtcacttcacctctgcggaagacctcaatctgctcatagccaaaaacacacggttggag
atctatgtggtcacggcagaggggctgcggcccgtcaaggaagtgggcatgtatggaaag
attgctgtcatggagctcttccggcccaagggtgagagcaaagacctgctgttcattctc
acatccaagtacaatgcctgcatcctagaatacaaacagaacggggagagcattgacatc
atcacccgtgcccatggcaatgtacaggatcgtattggacgcccatcagagacaggtatt
atcggaatcgtagacccagaatgccgcatgattggcctgcggctgtatgatgggctgttc
aaggtgatcccactggaccgggacaaccgtgagctcaaggccttcaacattagactggag
gagctgcaggtcatcgatgttcacttcctgtatggctgccaggccccaaccgtctgcttt
atctaccaggaccctcagggacgccacgtgaagacttatgaagtttctctgagggagaaa
gagttcaacaagggcccctggaaacaggagaatgtggaggctgaagcatcaatggtcatc
ccagtgccagagccatttggtggagctataatcataggacaagagtccatcacctaccac
aacggagacaaatacttggccattgcaccgcccactatcaagcaaagtaccatcgtctgt
cacaaccgggtggaccccaatggctcgcgctacctgcttggggacatggagggacgtctg
ttcatgctgctgctggagaaggaggagctcatggatggcacagtggcgctcaaagacctg
catgtggagctgcttggagagacatctattgctgagtgtttgacctacttggacaatggt
gtggtctttgtgggctccagactgggcgactcccagttagtgaagctcaacgtggacagc
aatgaccagggttcatatgtggcggtgatggagacattcaccaatctggggcccattgtg
gacatgtgtgtggtagacttggagaggcaaggacagggccagctggtgacatgctcaggt
gcgttcaaggagggctctcttcggattatccgcaacggcattggtattcacgagcacgcc
agcattgacctgccaggaatcaaaggtttgtggccgctccgctccgaggcaggcagagag
acagatgacatgctggtgctgtctttcgtgggtcaaacacgggtgttgatgctgagtggc
gaggaagtcgaggagactgaacttccaggctttgtggacaaccagcagacattttactgc
ggcaacgtggcgcaccagcaactcattcagatcacgtcgggctccgtgcgcctggtgctt
caggacagcaaggcattagtgagtgaatggaaagagccacagggcaggaatatcagcgtg
gctgcctgcaaccacactcaagtggtgcttgccgtggggcgggccctctattatctgcag
atcctcgctggagagctcaaacagatcagtaccacagagatggaacacgaggtggcctgc
ctggacatcacacctctgggggaggccggctctgagtcgccactctgtgctgtgggactc
tggaccgacatctcagcccgcgttctcaaactgccctgcttcacagccctgcacaaggaa
atgctgggtggagagatcatccctcgctcaatcctaatgaccacctttgaaggcagctac
tacctgctgtgtgccctgggagatggagcgctcttctactttggtctggacctgcagact
ggtgccctcagcgagcgcaagaaggtcaccctcggcacccagcccactgtgctgaggacc
ttcagatccctgtccacctccaatgtcttcgcctgctccgaccgacccactgtcatctac
tcctccaaccacaagctggtcttctccaatgtcaacctcaaggaggtcaactatatgtgc
ccgctcaactctgagggctatcctgacagtctggctctggccaacaacagcactctgacc
attggtaccatcgacgagattcagaaactccacatccgcactgttcccctctatgagtct
cccaggcggatctgttaccaggaggtttcccagtgttttggggttttgtccagcagggtg
gagattcaggatgtgagcggcaccacatctgccgtgcgccccagcgcgagcactcaggct
ctctccagcagcgtgagctccagcaagctcttcccaagcagcacctcaccccatgagacc
tccttcggcgaagaggtagaggttcacagtctgctagtcgtggatcagcacacctttgaa
gttctccatgcccatcagttcctgcccagtgagtatgccctcagcatggtgtcatgtcgt
ctgggaaaagacccgtcagtgtattttatcgtcggcactgccatggtgtacccagaggag
gctgagcccaagcagggacgcatcattgtcttccactacactgacggtaagctgcaaacc
gtggctgagaaggaggtgaaaggagctgtctattctatggtggagttcaatggcaaactg
ctggccagcatcaatagcacagtccgtttgtatgaatggacggctgagaaggagctgaga
acagagtgtaaccactacaacaatatcatggccctttacctgaagaccaaaggagatttc
atccttgtgggagacctgatgaggtccgtcctgctgctggcgtacaaacccatggagggt
aactttgaagagattgctcgtgacttcaatcctaactggatgagcgcagttgaaatcctg
gacgatgacaacttcctgggggcagagaacgccttcaacctgtttgtctgccagaaggac
agtgcggccaccacggacgaggagcggcagcacctgcaggaggtgggggtcttccacctc
ggggagtttgtcaatgtgttctgccacggctcgctggtgctgcagaacctgggcgagagc
tccacgcccacccagggctcagtgctcttcggcaccgttaacggcatgattggtctggtg
acctccctgtccgagggctggtacagcctcctcctggacctgcagaaccgcctcaacaag
gtcatcaagagcgtgggcaagatcgaacacagcttctggaggtccttccatactgagcgg
aagacagagcaggccacaggattcatcgacggggacttgattgagagcttcttggatctc
ggccgggccaagatgcaggaggtcgtcagtactttacagatcgatgacggcagcggcatg
aagcgtgaagccacagtggacgaggtcattaagattgtggaggagctgacgaggattcac
taa
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