Lates calcarifer (barramundi perch): 108887843
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Entry
108887843 CDS
T04895
Name
(RefSeq) sorting nexin-1 isoform X1
KO
K17917
sorting nexin-1/2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108887843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108887843
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108887843
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Macropinocytosis
Sorting nexins
108887843
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
108887843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps5
PX
Sorting_nexin
BAR_3_WASP_bdg
FAM92
DUF2203
Motif
Other DBs
NCBI-GeneID:
108887843
NCBI-ProteinID:
XP_018538975
UniProt:
A0AAJ7PUH0
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Position
LG2:9231164..9239141
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AA seq
523 aa
AA seq
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MAASSDRNPPPFPAAEEPEAGLCDMADGDSDEGEDIFVSNSNPVAVSRGVSQPDHVSEEP
PDLFSEEETINTTAKSNGVHSDDDNDLFGEAHVELSTDKPGSSGRKELSASSGPRPASSF
AQSPASMEPTSLEQLEEEEAKDSFDVDVAVTNPEKIGDGMNAYVAYKVSTRTSLPMFRSK
TFSVRRRFSDFLGLYEKLSVKQSLHGCVIPPPPEKSVVGMTKVKVGMDDPSSVEFVERRR
AALERYLQRVVSHPSLLQDPDVREFLERDDLPRAVNTQALSGAGFLKMINKASDAVNKMT
IKMNESDTWFEDKFQEVENEEQQLRKLHAVVDSLVNHRKELCGNTAVFAKSMAMLGNSED
NTALSRALSQLAEVEDKMEQLHQEQAASDFFIFAELLADYIRLLGAVRGCFDQRMRAWQR
WQEAQSTLQKKREAEAKLLWANKPDKLQQAKEEIAEWEARVTQYERDFDRIGMTVRKEVL
RFEKEKAKDFKSQIIKYLEAMLQSQQRLIKFWEAFLPEAKAIA
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagctcagacaggaatcctcctcctttccccgcagctgaggagccagaagct
ggactgtgtgacatggcagatggagacagcgacgagggagaggacatcttcgttagtaac
agtaaccctgtggctgtgagtcgaggagtttctcagccggaccatgtcagtgaagagcct
ccagatttgttcagtgaggaggagaccatcaacacaactgccaaatccaacggagttcac
tctgatgatgacaacgacctgtttggtgaggcacatgtggagctgagcacagacaagcct
ggtagctctggtaggaaggagctctccgcctcttctggccctcgtcctgcctcctcgttc
gctcagagccctgcatccatggagcccacctccttggagcagttggaggaggaagaagct
aaggacagttttgatgtggatgttgctgtcaccaaccctgagaaaattggagacggcatg
aacgcatatgtggcctacaaagtatccaccaggacttccttgcccatgttcaggagtaag
accttctctgtgaggaggcgtttcagtgacttcctgggtctttatgagaagctgtctgtc
aagcaatcgctccatggctgcgtcattccaccaccacctgagaaaagcgttgtaggaatg
accaaggtgaaggtgggaatggacgacccatcgtcagtagagtttgtggagagaaggaga
gcagctctggagagatatcttcagagagtggtgtctcatccatcgttactgcaagatcct
gatgtccgtgaattcttggagagagacgatctacccagggcagtgaacacccaggcgctg
agtggagctggtttcctcaagatgatcaataaggcatcagatgctgtcaacaagatgacc
atcaagatgaatgagtctgacacttggtttgaggacaagtttcaggaggtggagaatgag
gagcagcagttgagaaagcttcatgccgtggtcgactccctggttaatcacaggaaggag
ctgtgtgggaacacagcagtatttgccaaaagtatggccatgttgggaaactctgaggac
aacacagccctgtcacgggccctgtcccagctggcagaggtggaggacaagatggagcag
ctgcatcaggagcaggcagccagtgacttcttcatctttgcagagctgctggctgactac
atccgcttgctgggtgctgtgcggggctgttttgaccagcgcatgcgggcgtggcaacga
tggcaggaggctcagagcacactccagaagaagagagaggccgaggccaagctgctgtgg
gccaacaagccggataaactgcagcaggccaaagaggagatcgctgagtgggaggcgaga
gttactcagtacgagagagactttgacaggattggcatgactgtacgcaaggaggttctt
agatttgagaaagaaaaagccaaggatttcaagagccagataatcaaatatttggaggca
atgctgcagtctcaacaacggctcataaagttttgggaggcattcctgcctgaggcaaag
gcaatagcttaa
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