Lates calcarifer (barramundi perch): 108887849
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Entry
108887849 CDS
T04895
Name
(RefSeq) nuclear factor of activated T-cells, cytoplasmic 1 isoform X2
KO
K04446
nuclear factor of activated T-cells, cytoplasmic 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04020
Calcium signaling pathway
lcf04148
Efferocytosis
lcf04218
Cellular senescence
lcf04310
Wnt signaling pathway
lcf04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108887849
04310 Wnt signaling pathway
108887849
04020 Calcium signaling pathway
108887849
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108887849
09143 Cell growth and death
04218 Cellular senescence
108887849
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
108887849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108887849
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) NF-AT
108887849
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RHD_dimer
RHD_DNA_bind
TIG
Motif
Other DBs
NCBI-GeneID:
108887849
NCBI-ProteinID:
XP_018538991
UniProt:
A0A4W6E9V5
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Position
LG15:28741644..28800384
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AA seq
943 aa
AA seq
DB search
MQDTFRLSVNTKFSFGATVGKERGLRFLTSLTANMKSAEEDAYSYTPNVSLSLPLGMGNP
CLATQYHTLQSSPVISVSSCHQTGYSLQNDNHAASGYYLPHGLRPNGAPALESPRIEITA
YSQYPEDEVEESNSEDQFIKRGVNSIVTLTLPNADGYRDPSCLSPASSISSRSCNSEASS
YESGFYNYDNSPQNSPWQSPCVSPRGSSSLLSCPHASGPTGSPHHSPSTSPQIGAMAEEG
WPAQPRGSRPNSPSCSGGGGGGGGGGGNGGGGGMGKRKYSLNGAPYRQTSCSPNQSPTPS
PHGSPRVSVTDENWLANTNQYTNSAIVAAINALTTDGVIDMGEGIPIKTRKTMLDHSPSM
SLKVEPGGEELGPDGELCHEDYPSRLALKKENYCGGFLDVPQHPYSWSKPKPYLSPSLPA
LDWQLPSCSGPYNLQIEVQPKSHHRAHYETEGSRGAVKALSGGHPVVQLYGYMESEPLTL
QLFIGTADDRLLRPHAFYQVHRITGKTVSTASHEVMQSNTKILEIPLLPENNMRAIIDCA
GILKLRNSDIELRKGETDIGRKNTRVRLVFRVHINQTNGRTVSLQTASNPIECSQRSAQE
LPLVEKQSVESYPATGGKMMLLSGLNFLPDSKVVFVEKAQDGHHLWETEAKVDKDSIKSN
TLVVEIPPYRNQRISSPVHVNFYVCNGKRKRSQCQRFTYLPPNVPIIKTEPNDEYDSLGT
AGLPMHSKPYYSQPRLTPIMPVADPDACLVGAYPPCPPRHATIPSSSPSSSPTLHDLSPV
AYSKCLPNSPTHAAPPGPVVPPIQETPGHPNLAHPASPDHGSSLGMLHSQGSPSHLNSPG
PHGYHPIYANSSPSSSPVSHPSTPGGTAESPFIQAYSPSQAQTAASSAQAGGSPPSLLRE
DASPPSMAITVKQEPQDLDQMYLDDVNEIIRNDLSSISVHTHA
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgcaggataccttccgcctgagcgtcaataccaagttcagctttggagcaacagtcggt
aaggagcggggactccggtttctcacctctctcaccgccaatatgaagtctgcagaagaa
gatgcatacagctacacaccaaatgtcagcctgtcccttccactgggcatgggaaacccc
tgtctggccactcaataccacaccttacagtccagcccagtcatctcagtttcttcttgc
caccagacaggctacagccttcaaaatgataaccatgcagcatcaggctattacctgccc
catggcctgagacctaatggggctccagccctggaaagcccccgtattgagatcactgcc
tacagccagtacccagaggatgaggtagaagagagcaacagtgaggaccaattcatcaaa
cgaggtgttaactccatcgtcacgctgacgctgcccaacgcagacggctaccgtgatccc
agctgcctcagccccgcgagcagcatctcctcacgcagctgtaactctgaggcgtcctcc
tatgagtctggcttctacaactatgacaactccccacaaaactccccgtggcagtcccct
tgcgtttctcccagaggctcatcctcacttctgtcctgcccacatgccagcggccccaca
ggctccccccatcactcaccctccacctcccctcagataggagccatggctgaggaaggc
tggccggctcaacctcgtggctccaggcctaactccccttcctgcagcggaggcggcgga
ggcggcggaggcggtggaggcaacggcggaggtggaggaatggggaagagaaagtacagc
ctcaacggtgccccttaccgtcagacatcctgctcgcccaaccagtctcctaccccgtct
ccacatggctcacccagggtcagcgtcacagatgagaactggctcgccaacaccaaccag
tacaccaactctgccattgtggccgccatcaatgctctaaccacagacggagtgatagac
atgggggagggaatcccaatcaagacacggaagacaatgctggaccactcaccctccatg
agcctgaaggtggagcctggtggcgaggagctgggtcctgatggggagctctgtcatgag
gactacccctcccgactggccctgaagaaggagaactactgtggagggttcctggatgtg
cctcagcatccatactcctggtctaaacccaagccttacctcagcccatctctgccagct
cttgactggcagcttccatcctgctccggcccgtacaacctacaaatcgaggtgcagcca
aagtcccaccacagggcccactatgagaccgaaggcagccgaggggctgtgaaggcgctc
tctggaggacaccctgttgtacagctttatggctacatggaaagcgagcccctcaccctg
cagctgttcatagggaccgcagacgaccgcctcctgcgaccacatgccttctaccaggtc
caccgcatcaccggcaaaaccgtctcaaccgccagccatgaagtcatgcaatccaacacc
aaaattctggagatccctctactgcctgaaaacaacatgagagccataattgattgtgca
gggatcctgaagctgcgtaattcagacattgagctccgcaaaggggaaacagacatcgga
cgtaaaaacacacgtgtgaggttggtgttccgagtgcacatcaaccagaccaacggcagg
acagtgtccctacagactgcctccaaccccattgaatgctcccagcgctcagcacaggag
cttcccttggtggagaagcagagtgtggaaagttaccctgccacgggaggcaaaatgatg
ctcctgagtggtcttaacttcctccctgactcaaaggtggtgttcgtggagaaggcccag
gatgggcatcacctgtgggagaccgaagccaaagttgacaaggactccatcaaatctaat
actcttgttgtggagatcccaccatacagaaaccagagaatatccagcccagtgcatgtt
aacttctacgtctgcaacggcaagaggaagaggagccagtgccagcgcttcacctatctc
cctcctaacgtgccgataataaagacagaacccaatgatgaatatgattctctggggact
gcagggctgcccatgcattcaaagccctactacagccagcccaggctcactcccatcatg
cctgtagctgatcctgatgcctgcctggttggtgcctaccctccctgcccacctcgccat
gccaccattccatcatcttctcccagctccagccccaccctgcatgacctatcccccgtg
gcatacagcaagtgcctccccaacagccccacccatgcagcgccaccagggcctgtggtt
ccccccatccaggagacccctggccaccccaatctcgcccacccagcctcgccagaccat
ggctcttcccttgggatgctccattctcagggcagtcccagccacctcaacagcccagga
ccccatggttaccaccctatctatgccaacagcagcccctcatcctccccagtgtcccac
ccttcgactcctggtgggactgcagagagcccattcattcaggcctacagccccagtcag
gctcagacagcagccagctcagcccaggccggagggagcccacccagcctgctacgtgag
gacgccagccccccttcgatggccatcacagttaaacaggagccacaggacctggaccag
atgtacttagatgatgttaacgagatcatcaggaacgacctctccagcatttcagtgcat
actcatgcatag
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