Lates calcarifer (barramundi perch): 108887984
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Entry
108887984 CDS
T04895
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
lcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108887984
09124 Replication and repair
03420 Nucleotide excision repair
108887984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108887984
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108887984
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108887984
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108887984
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108887984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
108887984
NCBI-ProteinID:
XP_018539269
UniProt:
A0AAJ7PUT3
LinkDB
All DBs
Position
LG2:complement(6162020..6169424)
Genome browser
AA seq
784 aa
AA seq
DB search
MGKKDKGDRDKKSKKRVYMEDEDDDEVVGSESQEAIPAAAGKQVDESTTKLDEYGAKDYR
VQMLLKNDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHIHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDNVIRECRLRSADGDNTELITEVIHSKSAISKSVQEKGGTSTSQQPSEGETS
TQQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMRSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSSRDEQQQLLQKVLAAS
DLDAEEEVVAGEVGARPQFSRRAGTMSSMSGADDTVYMEYQSRSNKASASALKSVHPLFK
RFRK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaaggataaaggagaccgggacaagaagtccaaaaagcgtgtctatatggag
gatgaagatgatgatgaggtggtgggcagcgagtctcaggaggccatacctgctgctgca
gggaaacaagtggacgagtccactacaaaactggatgagtatggagccaaagactaccgt
gttcagatgctgctaaaaaatgatcactcttcacgccccctctgggtggctccagatgga
cacatctttctggaggccttctcgcctgtgtataagtatgcccaggatttcttggtggcc
attgcagagccagtgtgcaggcctaaccacatccacgagtacaagctgacagcctattcc
ctgtatgcagctgtcagtgtagggctgcagacctctgatattgtggagtacctgcagaaa
ctcagcaagacgtctgtacctgatggaattgtacagtttattaagctctgcacagtgagt
tatggcaaagtgaagctggtgctcaagcacaacaggtacttcgttgagagtgccttccct
gatgtgatacagcgtcttcttcaggacaatgtgatccgcgaatgtcgtctccggagtgca
gatggagacaacactgaacttattactgaagtcatccacagcaagtcagcgatctccaag
tctgttcaggaaaagggaggtacttccacatcacagcagcccagtgagggagaaacctca
acccagcaggtccctgaggatatcttcagctactatgaacagatggataaagaagaggaa
gaggaggaggagacgcagactgtgtcctttgagattcgccaggagatgattgaagagctg
cagaagcgttgtattcagctggagtaccccctcctagcagagtatgactttcgcaacgac
acagtcaacccagacatcaacatagacctgaagcccactgctgtgttgcggccctaccag
gaaaagagtctgcgcaagatgtttgggaatggacgtgctcgctctggggtcattgtgctg
ccctgcggagctggcaaatctctggtgggcgtgacggcagcatgcacggtgcgcaaacgc
tgcctggtgctgggtaactcttctgtgtcggtggagcagtggaaggcacagttcaagatg
tggtccaccatcgatgactctcagatctgccgcttcacctccgatgccaaggacaagccc
attggctgctcggtggccatcagcacctactccatgctgggtcacaccaccaagcgctcg
tgggaggccgagagggtcatggaatggatgcggagccaggagtggggactcattatcctg
gatgaggtgcacactatccctgccaaaatgtttcgtcgtgtcctgaccattgtccaggca
cactgcaaactggggctcaccgccacacttgtcagggaggatgacaagattgtggacctc
aacttcctaattgggcccaagctgtacgaggccaactggatggaactgcagaacaatggc
tacattgccaaagtccagtgtgcagaggtgtggtgcccgatgtctccagagttttacaga
gagtacgtggccattaagactaagaagcgcatcctgctttataccatgaaccccaacaag
ttccgtgcctgccaatttctcattcgctttcatgagcggcgcaatgacaagattattgtc
ttcgctgacaacgtgtttgcgttgaaggaatatgccattcgcctcaacaagccttacatc
tatggtccaacctcacagggagaacgtatgcagattttacagaacttcaaacacaacccc
aagatcaacaccattttcatttccaaggttggagacacctcatttgacttgccagaagcc
aatgttctgatccagatctcctcccatggtggatcacgcaggcaggaagcccagaggctt
gggagagtcttacgagccaagaaaggaatggtagcagaggagtacaatgcatacttctat
tcactggtgtcccaggacacccaggagatggcttactccactaagaggcaaaggttcctg
gtggatcagggatacagctttaaggtcattacaaagttggcaggtatggaggaagaggac
ttaatgttctcctccagagatgagcaacagcagctgcttcagaaagtcctagctgcttca
gacctggatgctgaggaggaagtggtggcaggggaggtgggcgcacgaccgcagttctcg
aggcgagcaggcaccatgagctccatgtcgggtgcagatgacacggtctacatggaatat
caaagccgaagcaacaaagcctcagcttcagcgttgaagagtgttcatccactgttcaag
cgcttcagaaagtag
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