Lates calcarifer (barramundi perch): 108887993
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Entry
108887993 CDS
T04895
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
108887993
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108887993
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108887993
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108887993
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Protocadherins
108887993
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
108887993
NCBI-ProteinID:
XP_018539280
UniProt:
A0A4W6D1K1
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Position
LG2:complement(5461774..5466196)
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AA seq
889 aa
AA seq
DB search
MFNNRHLSLRKRGGIWGLCILLLYTSPLSCFANFSQAKELIYKIKEGLPRGTFIGAIGVD
LHLDFTVEPPFLFSLPQKKVSEQYVNLNNTTGELYTSATEIDRETLCPDNSERQGCVLSL
DVFVLPQQYFQLIKVKIVIEDVNDNRPKFPVDEICMSVPENTPINARYAVEQSAVDPDLG
LHGVQTYWLVNDFGMFTLDVEENDGGELTPFLIVTESLDRETQAEYITDIIAEDGGTPPL
LGAATLKIVITDVNDNCPQFTESQINVTLHGNTTKGAHLARLHAFDPDLGANAQISYAYS
ERVPRDTRSLFHLDRITGVIKLAGKIDTITATFYKLTVLANGPGCIPAVATVTVHIIKVV
TGPPAVIPRYIAPEKDGVVTIKESEPAFTPIAFFTVKNIDINQRVDCHLEGAGPFRLGPY
QLFKNEYLLETTEPLDYERIQEYELIVVAKNTRGLVIKTFLKVQVLDENDNAPVFQQALV
EISIEENNPPNTFLTQLQASDQDSESRGEVIYLLGGDAPGIFIVDRLTGVLTVATSLDRE
EKETYRFIVRAVDQGTPRRESIATVLVTVQDRNDNSPRFINKDFTFFVPENFPGYGEIGV
LSVTDADAGENGWVALSILNGSDIFMIDTGRGALRAKTSLDREQQGTYQLWIEAIDGGEP
ALSCVTMVTVLLLDVNDNPPIVLFPQSNQSYMLVLPNTLPGTSITEVYAVDKDTGMNAVI
AYSIIKRKGGEPGSFAIDPETGNITLKRELSNRGLYSLLVKVSDHGQPEPLYSTVMVNFF
VNETVSNESYIQSLLTREADIEIEERPWYIGQMTEGPERYELFPCQPVLIALSVTCLGLF
FCVVTLTSYICCKRFKKHRKKRSEVEIPLKMKNDSMQVVNRKLRQISNI
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaacagacacctcagccttagaaaaagaggaggaatatggggtttgtgcatc
ctcttgctttacaccagccctctttcctgttttgcaaatttcagccaagcaaaagagctc
atctataagataaaggagggattacccagggggaccttcataggggccattggagtagac
ttacatttggatttcactgttgagcccccctttctattcagtctcccgcaaaagaaggtc
agtgaacagtatgtgaacctaaataataccactggggagctttacacatctgctacagag
attgacagggagaccctttgtcctgataactcggaaagacagggctgcgtcctctcactg
gatgtgtttgtgttgcctcaacagtactttcagctcatcaaagttaagattgtaattgag
gatgtgaacgacaacaggccaaagtttcctgtggatgagatctgtatgtctgtccctgaa
aacacacccatcaatgctcgttatgcagtggagcagtccgcagttgacccagacctgggt
cttcatggggtgcagacctattggctggttaacgactttggcatgttcacactggatgtt
gaggagaatgacggaggtgagctgacgcccttcctcattgtgactgagtccttggacaga
gagacacaggctgaatacattacagatataattgcagaggatggagggacccctcctcta
ctcggcgcagctactttgaaaattgtcatcacagatgtgaatgataactgcccccaattc
acagagtcacaaattaatgtcactctgcatgggaataccactaaaggggcacatttggca
cgtttgcatgcttttgaccctgaccttggtgctaatgctcagatcagctatgcttacagt
gaacgtgtgccaagggacaccaggagcttgttccatttggacagaatcacaggggtgatc
aagctagcagggaaaatagacacaatcacagccacattttacaaactcaccgttctggct
aatggacctggttgtatccctgctgttgccaccgttactgtccatatcatcaaagttgtc
actggacctcctgctgtcataccccggtacattgcaccagaaaaggatggcgtggtgaca
ataaaggagtcggagccagcatttactccaattgctttttttactgtcaaaaacattgat
ataaaccaaagggtggactgtcatctggaaggggctggtccatttaggcttggcccctat
cagctgttcaagaacgaatacctgctggagactacagagcccttggactatgaaaggata
caggagtatgagctaattgtggtcgctaagaatactcgagggcttgtcattaagaccttc
ctcaaggtgcaggttttggatgagaacgataacgcaccagtatttcagcaggctttggtg
gaaatatctattgaggaaaacaacccaccaaacacctttctaacccagctccaagcctca
gaccaggacagtgaaagccgaggggaagtcatctacctccttggaggtgatgcccctgga
atcttcatcgtggatcgtttgacaggcgtcctaactgtggccacatccctggaccgagag
gagaaagagacataccggttcatagtgagagcagtggatcaggggacacccaggagggag
tcgattgcaacagtactggtgaccgtacaagaccgcaacgacaacagtccacgcttcatc
aataaagactttactttctttgttccggagaacttcccagggtatggtgagatcggagtc
ctctctgtgacagatgctgacgctggggaaaatggctgggtggccctttccatcctcaat
ggcagtgacatcttcatgatagacacagggagaggggcgctgagggccaagacgtccctt
gaccgtgagcaacaagggacatatcagttgtggattgaggctattgatggtggtgagcct
gcactttcctgtgttaccatggtgaccgtgctgctgttggatgtaaatgacaatccacct
attgtcctcttcccccagtccaatcagtcctacatgcttgtgctacccaatacgttacca
ggaacatcaatcacagaggtgtacgctgtggataaggatacaggcatgaatgctgtaatc
gcctatagtatcattaagaggaaaggtggcgagccagggtcatttgccattgacccagaa
acaggaaatatcacattaaagagggaactcagcaaccggggcctctacagccttctggtg
aaggtcagtgatcatggtcagcctgaaccgctttactcaacagtcatggttaacttcttt
gtcaatgaaacagtgagcaatgagagttatatacagagtctgctgaccagagaggctgac
atagagatagaggagaggccctggtacattggccagatgacagaggggcctgagaggtac
gagctgttcccctgtcagcctgtcctcattgcgctttcagtgacatgtctggggctattc
ttctgtgttgttacactgacatcttacatttgctgtaagaggtttaaaaagcacagaaag
aaaagatcagaagtggaaatacctttaaaaatgaagaatgactcaatgcaggttgtgaac
agaaagctcaggcagatctcaaatatctaa
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