Lates calcarifer (barramundi perch): 108888194
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Entry
108888194 CDS
T04895
Name
(RefSeq) eukaryotic translation initiation factor 4 gamma 1 isoform X1
KO
K03260
translation initiation factor 4G
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108888194
03012 Translation factors [BR:
lcf03012
]
108888194
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108888194
mRNA cycle factors
Stress granule specific factors
108888194
Translation factors [BR:
lcf03012
]
Eukaryotic type
Initiation factors
eIF-4
108888194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
MA3
W2
eIF4G1-like_eIF4E-bd
Motif
Other DBs
NCBI-GeneID:
108888194
NCBI-ProteinID:
XP_018539586
LinkDB
All DBs
Position
LG21:23571893..23608789
Genome browser
AA seq
1736 aa
AA seq
DB search
MNKAPQPITGPPSTPHPAPSPGLSQPSFSSGQPPSVVFATPPPPQMNPTPQPRQFAPGPR
PIHQQGSFRSLQPYYTNRASLPPGSGPRGVPPSSAPRPVTPTHVYQPGSQMMMIPGQQLP
FPSSPQGPAYFIQGQYRSATYVATPQQYPVPTGTPGFYPGTSPAEYGTYGAYYPAQPQFT
PSVQAAPVIMNPAPQQQQPPPQPPQHIPTKRERKQIRIRDPNQGGRDITEEIMSGGRSGS
TPTPPQTAISGSESTAVAQANGESVTAAATPALVRPDDRGKPTPPPLSKTPELSKGDPIP
TEATSSDTNTKPPAPPLLSESEDAPLNTISTLAPSAPAADMMDAPQPPREPTPTPQSAPE
VPAYPAPLPDPVSISTAQDKMDKKAAAEEEEEVEKELENKAEEAAASLDTPPAPPSTTNG
VALVEPERLSVMLPPTHLETPLESPIAQPEELCLPNGLPLPAPQDPEAPAISAAERDDSP
IAEPDVIQQPVIQTSTAISQAAPTTTVQATTPPVDKPAPAPAVQEIPAEPVIQAAPVQAE
EEDTAPAVALDVKEDTAVPQSTAKEETPSPAETVSIADSTPETVPTPPPSTAEEREEIPP
PQTVTPALVETTMQAAVSVPKKKRKMKDLNKKEAVGDLLDAFKEEQVVTPPEPEPAPTPE
PQPPAASPPVPEEADLTWEDKEDKLDAENIQPDAPKPTATDKKYQYKEEQWKPINPEEKK
KYDREFLLGFQFISASMNKPEGLPAISDVVLDKANKTPLRQLDPSRLPGMNCGPDFTPSF
ANLGRPGMGGGSRGPPPGMGIGVGGPRRSQQIQRKEPRKIITSMSLSDDVQLNKAEKAWK
PSMKKTVRSRGGEETEENDSEQIKTQELFKRVRSILNKLTPQKFQQLMKQVTELTIDTEE
RLKGVIDLTFEKAISEPDFSVAYANMCRCLMGLKVQTTDKPGVTVNFRKLLLNRCQKEFE
KDKDDDEIFERKQKELEAASGEEEKQRLIEELEDAKDKARRRSLGNIKFIGELFKLKMLT
EVIMHDCIVKLLKNHDEESLECLCRLLSTIGKDLDFEKAKPRMDQYFNQMEKIIKERKTT
SRIRFMLQDVLDLRRNNWVPRRGDQGPKTIDQIHKEAELEEHREQMKVQQALISKKELGG
GPGGRMGGGGPSGRGGPHTPGRGAPPQDEGWNTVPISKNRPIDTSRLSKITKTPVLDFNN
QLLAPGGKGTWGSWGKGSSGGTSAKPADSGSESGSRPTTSTLNRFSALQQPPSSSGSSLD
SDRRVPQRNSSSRERSDRFDRSDRGSDRFDRRDDRRDDRDRNRLQVTKRSFSRENEERSR
EREQRGSADPVRRVASMTDDRDRGSRERTRSKENVKRETTATPPPSQTPTKPALTEEELD
KKSTAIIEEYLHINDMKEALQCVQEMNSTQLLFVFVRNGLESTLERSTIAREHMGLLLHQ
LIKNGILPTQQYYKGLQEILEVAEDMAIDIPHIWLYLAELITPMLHEGGIPMGELFREIS
KPLIPLEKAGDLLVHILTLLCKGMSHKKAGTMWREAGLRWKDFLPEDVDVNKFVTEKNVE
FTLGDESEKSKKKELSSAELIKQLDRLIQDKADNQRIFDWVEANLDEQQTSSNMFVRALM
TCVCQSAIICENPYKVDGEQIKQRAKLLQKYLKDEQKELQALYALQALMVQMEQPANLLR
MFFDTLYDEDVIKEEAFYKWESSKDPAEQQGKGVALKSVTAFFTWLREAEDESDNS
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagcaccgcagcctataacgggacccccctccaccccccaccctgccccctcc
cctggcctgtcacagccctcattctcctctgggcagcccccttctgttgtgtttgccacc
ccaccgcctccacaaatgaacccaacaccacagccccgacagtttgccccagggccccga
cctatacaccaacagggaagcttcaggtcgctccagccctactataccaacagggccagc
ctgcctcctggcagtgggcctcgaggtgtccctcccagcagtgcccctcgccctgtgaca
cccacccatgtctaccagccgggctcccaaatgatgatgatccctgggcaacagttgccc
ttccccagctcaccacagggacctgcctacttcatacagggacagtaccggtcagctacc
tacgtggccacaccccagcaatatccagtcccaacaggcaccccaggcttctacccaggc
accagtcccgctgaatatggtacttacggggcctactaccccgcccagcctcagttcacc
ccctctgtgcaggcggcacccgtcatcatgaaccctgcccctcagcagcagcaaccacca
cctcagcctccccaacacatccccaccaaacgggaacgcaaacagatcagaataagagac
cctaaccaaggaggtcgagacattacagaggagattatgtcagggggccgcagtggctct
accccaaccccaccacagacagccatatctggatcagaaagtacagcagtggcacaggcc
aacggtgagagcgtcacagctgccgctacaccagcactggttagaccagatgacagaggt
aaacctacgcctcctcctctgtcaaagacccctgaactttctaagggtgaccccatcccc
acagaggctacgtcctctgacacgaacactaagccccctgcgccccctctactatcagaa
tcagaggacgcccctctcaacactatttccacacttgcacccagtgctcccgctgcagat
atgatggacgctccccaacctccaagggaacccactccaactcctcaatcagcacctgag
gtgccggcctatcctgcaccccttcctgaccctgtgtccatctctactgcacaggacaaa
atggacaagaaagcagcagcggaggaggaggaggaggtggagaaagagttagagaataaa
gcagaagaggcagctgcctctttggacacacctcctgcccctccctccacaactaacggt
gttgccttggtcgagccagaaagactgtcggtcatgttgccacccactcacctggagact
cctctggagtctcccattgcacaacctgaggagctgtgccttcctaacggcctgccgctg
ccagcccctcaagaccccgaggcccctgccatcagtgcggccgagcgtgacgacagcccc
atcgctgagcctgatgttattcagcagccagtcatacagacctccacagccataagtcag
gcagcgcctacaaccactgtccaagccacaactccacctgttgacaagcctgcacctgca
cccgctgtccaggagattccagctgaaccagtcatccaggcagcacccgtacaggctgag
gaagaagacacagcccctgcggttgccctggatgttaaggaagataccgcagtgccccag
tccactgccaaggaagagacgccatctcctgcagagacggtttccatagctgacagcaca
ccagaaacagtgcccactcctcccccttccacagcagaggagagggaggaaatccctcct
ccccagacagttacccctgcccttgtagaaactactatgcaagctgctgtgtctgtgcca
aagaaaaagagaaagatgaaggatctgaataaaaaggaggcagtgggagacctcctggat
gcctttaaagaggagcaggtagtaaccccaccagagcctgagcctgccccaacaccagag
cctcagccccctgctgcctcccctcctgttccagaggaggcggacctgacctgggaggat
aaggaggacaagctggatgctgagaatattcagccagatgctcccaagccaaccgccact
gacaagaagtaccaatacaaagaggaacaatggaagccaattaacccagaggagaaaaag
aaatatgacagggagttccttctgggcttccagttcatctcagccagcatgaacaaacca
gagggtctaccagccatcagtgatgttgtcctagacaaggctaataagacccctctgcgt
caacttgacccaagccgtctaccaggaatgaactgcggtcctgacttcacaccctccttt
gccaatcttggcaggcctggcatgggaggaggaagcagaggaccacctccaggtatggga
atcggagtcggtggtccacgacgctctcagcagatccagaggaaggagccgaggaaaatc
atcactagcatgtcactcagtgacgacgtgcagctgaacaaggcagagaaggcttggaaa
ccctcaatgaagaaaactgttcgcagccgaggaggagaggagacagaggagaacgattca
gagcagatcaagacccaggagctgtttaaacgggtccgcagcatcctcaacaaactgact
ccccaaaagtttcaacagctaatgaaacaggtgacagaactgaccattgacactgaggag
aggttgaaaggagtcatagatctcaccttcgaaaaggccatctctgagccagacttttcg
gtggcctatgccaacatgtgccgctgccttatggggcttaaagtccaaaccacagataag
ccgggagtcactgtgaatttccgcaagctgctactaaatcgatgccagaaggagttcgaa
aaggataaagatgacgatgaaatctttgagaggaaacagaaggagctggaggctgcgtca
ggggaggaggagaagcagcggctcattgaggagctagaagatgctaaagacaaggccagg
aggcgctcactgggtaacattaagttcatcggtgagctgttcaagcttaaaatgctcaca
gaggtcatcatgcacgactgcattgtaaagctgctcaaaaaccatgacgaggagtcccta
gagtgcctgtgtagactattatccaccatcggcaaggacctagactttgagaaggccaag
ccccgtatggaccagtacttcaatcagatggagaaaataataaaggagagaaagaccacc
tctaggatccgcttcatgttgcaggatgttttggaccttcgacggaacaactgggtgccc
cggcgaggcgaccagggtcccaagaccatcgaccagatccacaaggaggctgagctggag
gagcacagggagcagatgaaggtgcagcaagccctcatctccaagaaggagttgggtgga
ggcccaggaggcaggatgggtggaggaggtcctagcggacgtgggggccctcacactccg
ggccgtggagctcctccccaggacgagggctggaacacagtgcccatctccaagaaccga
cctattgacacctctcgccttagcaaaatcactaagactcctgttcttgacttcaacaat
cagttgcttgccccaggaggtaaaggcacatgggggagctggggtaagggcagcagcggt
ggcaccagtgccaaacctgcagattctggctcagagtcaggcagccgtccaaccaccagt
actctgaacaggttctcagccctgcagcagcctccatcctcttcaggctcttcactggac
tcagacagacgagttcctcagagaaacagctcgagtcgagagcgcagtgaccgcttcgac
cgctctgatcgtggcagcgaccgctttgaccgtcgagatgacagacgagacgaccgtgat
cgcaaccggctgcaggtcaccaaacgcagcttcagtcgggagaacgaggagcggagccgc
gagagagagcagcgcggttctgccgatcctgtccgccgagtagcaagtatgacagacgac
cgagaccgaggcagcagagagaggaccaggagcaaagagaatgtgaagcgggagacaact
gccacccctccaccatcccagacccccaccaagcctgccttgaccgaggaggagttggac
aagaagtccacagccatcattgaggagtacctccatattaatgacatgaaggaggcgctg
cagtgtgtgcaggagatgaacagcactcagctgctctttgtgtttgtacgaaatgggctg
gagtcgacgctggagcgcagcaccatcgccagggagcacatgggcctgctgctgcaccag
cttattaagaacggcatcctgccaacacagcagtactataaagggcttcaggaaatccta
gaggtggctgaagatatggcaatagacatcccccacatctggctgtacctggcagagctg
atcacgccgatgctccacgagggaggtatccccatgggagaacttttcagggagatttca
aagcctttgatccctctggaaaaagctggagacctgctggtccatatcctcactttactc
tgcaaaggaatgagccataaaaaggcaggcacaatgtggagagaggccggcctccggtgg
aaagacttcctacctgaggatgtagatgtcaacaagtttgtgacagaaaagaatgtggag
ttcacactgggtgacgagtcagagaagagcaaaaagaaggagctgagctccgccgagctg
atcaaacagctagaccgactgatccaggacaaggccgacaaccagaggatctttgactgg
gttgaggccaacctagatgagcagcagacctcttccaacatgtttgtcagagctctgatg
acctgcgtctgccagtcagcaatcatctgtgagaacccatacaaggtggatggtgagcag
atcaagcagagggccaaactgctgcagaaatacctgaaggatgagcagaaggagctgcag
gctctctacgccctgcaggccctgatggtgcagatggagcaacctgccaatctgctgcgg
atgttctttgacactctgtacgatgaggacgtgatcaaagaggaggccttctacaagtgg
gagtctagcaaagaccctgccgagcagcagggcaagggtgtggccctcaagtctgtcact
gccttctttacttggctccgcgaggctgaggacgagtccgacaacagctag
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integrated database retrieval system
