KEGG   Lates calcarifer (barramundi perch): 108888228
Entry
108888228         CDS       T04895                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108888228
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lcf03041]
    108888228
   03036 Chromosome and associated proteins [BR:lcf03036]
    108888228
Spliceosome [BR:lcf03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108888228
 Complex B
    108888228
 Complex C
   U2 SnRNP specific factors
    108888228
Chromosome and associated proteins [BR:lcf03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    108888228
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298
Other DBs
NCBI-GeneID: 108888228
NCBI-ProteinID: XP_018539641
UniProt: A0A4W6G8G0
LinkDB
Position
LG1:3819668..3888828
AA seq 1315 aa
MAKIAKTHEDIEAQILEIQGMKASLLAEDGEQGVGLDSTGFYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEDDTSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKS
GDLKAVNGSAATQAVAKRKRRWDQTADQTPSNATPKKMSSWDQADTTAETPGHTPAHTPS
NSRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSS
TPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDDKNIYVRYELEYVL
NT seq 3948 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacgcacgaagatatcgaagcccagatcctggagatccagggg
atgaaggcctccttgctggcggaggatggtgagcagggagtgggcctcgactccactggc
ttttatgaccaggagatctatggaggcagtgacagtcgctttgccggatatgtcacatcc
atcgctgccaacgaacaggaggatgatgatgaagacgatacatcgacaagcctgttgggt
caaaagaagccagggtaccatgcaccagtggcaatactcaatgccattcctcagtcagat
gagcaatacgatccattcgcagagcaccgtccacagaagatcgcagaacgggaagatgaa
tacaaagcccggcgcagacagatgatcatctcccctgagcgtctcgacccctttgcagac
gggggcaaaacgccggaccccaagctgcaggtcaggtcatatgtggacgtcatgttagag
cagaacctgtccaaagaggagagagagattcgtcagcagctggcagagaaggccaaatca
ggggacctgaaagctgtcaacgggtccgctgccacccaagcagtcgcaaaacgcaagcgt
cgctgggaccagacagcagaccaaaccccctctaatgctacacccaaaaagatgtccagc
tgggaccaggctgacaccactgctgagactccaggacacacccctgcacacaccccctca
aacagcagatgggacgaaacccctggccgccctaaaggcagtgagaccccaggagccact
cccagtacccgcatgtgggaccccactcccagccacacacccgcaggcgctgccacccct
ggcagggacacccctggccacgccacgcctggccacggtggagccacaggtagtgtacgc
aagaaccgttgggacgaaaccccaaagacagaaagagagactccgggacacgggagtggt
tgggctgaaaccccacgcacagacagaggagatgagtcggtgggcgagactccaacccca
ggggccagcaagaggaaatctcggtgggatgaaacccctgccagtcagatgggatcctca
acgccactgctcacccccggaaagactcccataggaacaccagctatgaacatggctact
ccaacaccaggtcacctgatgagcatgactccagagcagctgcaggcatggaggtgggag
agggaaatcgatgagagaaaccggcccctcacagatgaggagctagatgccatgtttcca
gagggatacaaggttttgcctccaccagcaggttacgtgccaatccgtactccagcccgc
aagctgtcggccacgcccactcctattggcggcatgacaggtttccacatgcaggcggag
gaccgcaccacaaaacaaatgaatgaccagccctcgggaaacctcccgttcctcaaacct
gatgacatccagtattttgacaaactgctggtggaggtggatgagtccacactgagccct
gaggagcagaaagaaaggaagatcatgaagctgctactgaaaattaaaaatggaacacca
cccatgaggaaggctgccctgcgtcagatcacagacaaggcgcgtgaatttggagcaggc
cctctgttcaaccagatcctgccactgctcatgtcgcccaccctggaggatcaggagcgc
cacctgctggttaaagtgattgaccgcatcctctacaaactggatgatctggttcgacca
tacgtgcacaagatcctggttgtgattgagccgctgctgattgatgaggactattacgcc
agagtagaaggcagagaaatcatctctaacttggcaaaggctgctggtttggctacgatg
atctccacaatgcgacctgacattgacaacatggatgagtacgtcagaaacaccacagcc
cgagccttcgctgtggtggcctctgcccttggtattccctccctcctgcccttcctcaaa
gccgtgtgtaaaagcaagaaatcctggcaggcacggcacacaggcatcaagatcgtgcag
cagatcgccatcctcatgggctgcgccatcctaccccaccttcgcagcttggtggagatt
attgagcacggtctggtggatgagcagcagaaggtgaggaccatcagtgccctggccata
gccgctcttgcggaagctgccacaccctacggtatcgagtcctttgactcagtcctcaag
cccctctggaagggtatcagacagcacagaggaaagggtttggctgctttcctcaaagct
attggttacctgatcccactgatggacgctgagtatgcaaactactacaccagagaggtg
atgttgatcctcatcagagagttccagtcccctgatgaggagatgaagaagattgtgctc
aaggtggtgaagcagtgttgtggcactgatggtgtcgaagccaactacattaagaccgag
atcctgccacccttcttcaagcacttctggcagcacaggatggctcttgacagacgcaac
tacagacagttggtggacaccacagtggagttggccaacaaagtgggagcagcagagatc
atttctcgtattgttgatgacctgaaagatgaggctgagcagtacagaaagatggtgatg
gagactattgaaaaaatcatgggcaacctgggcgcagctgacattgaccacaagctggag
gagcagctgatcgacggtatcctgtacgccttccaggaacagacaacagaggactctgtg
atgttgaatggttttggcacagtggtgaatgccctcgggaagcgtgtgaaaccctacctg
cctcagatctgcggtacggtgctgtggcgtctgaacaacaagtcagctaaagtccgtcaa
caggctgctgacctgatctcccgtacagctgtggtcatgaagacctgccaggaggagaaa
ctgatgggtcacttgggtgtggtgctgtacgagtacctgggagaggagtaccctgaagtg
ttgggtagcatcctgggagcactgaaggccattgtgaatgttattggtatgcacaagatg
accccgccaatcaaagacctgctccctcgtctgactcccatcctgaagaacagacatgag
aaagtgcaggagaactgtatcgacctggtgggcaggatcgctgacaggggtgctgaatat
gtgtcggccagggagtggatgaggatttgttttgagctgctggagctgctcaaggctcac
aaaaaggccatccgccgagccaccgtcaacacgtttggttatatcgccaaagccatcggt
ccccatgatgttttggccactctgctcaacaacctgaaggtccaggagcgtcagaacaga
gtctgcacgaccgtggccattgccatcgtcgccgagacctgttcaccatttacagtgctg
ccagcactcatgaatgaatatcgtgtccctgagctcaacgtgcagaacggcgtgctcaag
tccctctccttcctgttcgagtacatcggagagatgggcaaagactacatctatgccgtc
acaccactgctggaggacgctctcatggacagagacttagtccacagacagactgccagt
gccgtggtccagcacatgtctctgggcgtctatggttttggctgcgaagattcactcaac
cacctgctcaactacgtttggcccaatgtgtttgagacatcgcctcatgtgatccaggct
gttatgggtgccctggaggggctgagggtggccattggaccctgccgcatgttgcagtat
tgcttacagggtttgttccatccagccaggaaggtgagagatgtctactggaagatctac
aactccatctacattggctcacaggacgccctcatcgcccattacccacaggtctacaac
gatgacaaaaacatttatgttcgctatgagcttgagtacgtcttgtaa

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