Lates calcarifer (barramundi perch): 108888280
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Entry
108888280 CDS
T04895
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
108888280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108888280
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108888280
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
108888280
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
108888280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
DegQ
Motif
Other DBs
NCBI-GeneID:
108888280
NCBI-ProteinID:
XP_018539724
UniProt:
A0AAJ7PVJ7
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All DBs
Position
LG16_LG22:7379269..7395770
Genome browser
AA seq
1455 aa
AA seq
DB search
MPIDGSEDQVPSSLSGPASAALTPGGTEEDGATGGSAAVSSFPENSQGSEAAAAYPANTG
PGESNSAGKRSGTLLQIDRQRIQAASASSGADELQGLGVAVYDQDILEQGVLRQVDEAIH
EANQAAAKAEAEKEYQSVLDDVRSVTASLKHINKIIEQLSPYAASSKDISRKIESVKRQK
ENKEKQLKKVRAKQKRLQAILGGEDIQRVEAELLAEDDGEEEAGPSTLGSMLMPAQETEW
EELIRKGHMTPFGTRIPQKEVKKEPRKVMLAENSAFDQYLADQAKLATERKKVPLLKKRG
HSGLSPDEQARGKTSRILSSKDKKMRKRIRKLQITALKAHPKARPKAEPQLPKPRRKHHT
EGEETDSEGSEYLPSDEGIDPDKEEREAMEEGFGEGDEEKYELKPYKRKTEGRGRKKVKK
RQESEEEYCPESSDEEEDEKGKEKKCKDDGDVEYYRQRIRRWKRQRLREREEKRERGEEL
SDDSDAEFDEGFKVPGFLWKKLYKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQVISF
LAGLSYSKLRTRGSNYRYVGLGPTVIVCPATVMHQWVKEFHTWWPLFRVAVLHETGSFTS
SKERLIPEIAACHGILITSYSAVRNMQDALQRYDWHYIILDEGHKIRNPNAGVTTACKQF
RTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVQ
TAFKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEDQRQVYQSFLDSKEV
YQILNGDMQVFSGLIALRKICNHPDLFSGGPRLLRGIPEDQLTEEEHFGFWKRSGKLIVV
ESLLRLWFKQGHRVLLFTQSRQMLDILEVFVRENNYSYLKMDGTTTIASRQPLIARYNED
KSIFIFLLTTKVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLT
AGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDIYELFTLSDPDGGQGTETSAIFAG
TGSDVKAPKKPARPSSSHTVNHGTHAHKHSSANQNETGTDSKHSSTNIPVLRQGNTSPCS
KNSQGTPNVPTDSQKTNQNGVDVEPHILTNVQHTGQNNRDWDAAKPAVKNSHSPSSHQHR
DKDSALTSPQKHREKRKHCDSADLDKNKRKKRKHSKDARFEGRRISHLVKKRTYKKEDNA
DNEREDQKQSDDYVLAKLFKKSGIHSVMQHDTIMESSNPDYVLVEAEANRVAKDALKALK
VSRQQCRLPYNRPPPPPARKRFGQKKNSLLVAPSVQSVPTPSKCKDAAIVKKSVSKKPGS
GAHFSGEVAESESNSAPLSSSSLLAKMKARNHLSIPSSQREEAEDEEDGSGAPLQRSSPP
APPTEHDELLVDLRNFVAFQANVDGQATTQEVLEYFKPRLTQEQAPVFRELLRRICDFHR
TSGQEGIWRLKEHFH
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgcctatagacggttcagaggaccaggtgccctcctctctctccggcccggccagtgct
gccctcaccccgggagggacagaggaggatggagccacagggggctcagcagcagtcagc
tctttccctgaaaacagtcagggctctgaggctgctgcggcctatcctgccaacactgga
cctggggagagcaacagcgctggaaagaggtctggcaccctgctgcagattgacagacag
cgtatccaagcagcgtctgccagttctggagcagatgaactccagggccttggtgtggct
gtgtatgatcaggatattctcgagcaaggtgtcctccgacaggtggatgaggcaatccat
gaggccaatcaggctgctgccaaagctgaggctgagaaggagtaccagtctgtgctcgat
gatgtcaggtctgtgacagcatcactgaaacatatcaacaagattattgagcagctgtct
ccctatgctgcttccagcaaagacatcagtcgaaagattgaatctgtcaaacgacagaaa
gaaaataaggagaaacagctgaagaaagttagagccaaacagaagcgacttcaggccatt
ctgggaggagaggacatccagagggttgaagctgagcttctggcagaggatgacggagag
gaagaagccgggccgtccacactgggcagcatgctcatgccagctcaggagactgaatgg
gaggaacttatccggaaaggtcacatgactccttttggaacccgaatccctcagaaggag
gtgaagaaggagcctcggaaagtgatgcttgctgagaattcagcctttgaccagtacttg
gctgatcaggccaagttagctactgagaggaagaaagtccccctcctaaagaagaggggg
cactccgggctcagccctgatgagcaggccaggggaaaaactagcagaattctttcctcc
aaggataaaaaaatgaggaagcgaatccgaaagctccagatcacagctctgaaggcccat
cccaaggctcgacctaaggctgaaccacagctccctaaaccaaggaggaagcatcacact
gagggagaggagacagacagtgaggggtcagagtacctcccctctgatgaaggcatagat
cctgataaagaggaaagagaagccatggaggagggctttggggagggtgatgaagaaaag
tatgagctgaaaccatacaagagaaaaactgaggggagagggaggaaaaaagtaaagaaa
aggcaggagagcgaggaagaatactgccctgagagttcagatgaagaggaagatgagaag
ggtaaagagaaaaaatgcaaagatgatggagacgtggagtactacagacaacgaataagg
agatggaagcgacaacgtcttcgagaaagggaagagaagagagaaagaggtgaggagctt
tcagatgacagtgatgcagagtttgatgaaggcttcaaagtgcctggtttcctctggaaa
aaactttacaagtaccagcagacaggtgtgcggtggatgtgggaactccactgtcagcag
gcaggtggcatcctgggagatgagatgggattgggtaaaaccatccaggttatcagcttt
ctggccggactgagctacagcaaactgaggaccagaggatccaactacaggtatgttggt
ctgggtcctacagtcattgtgtgcccagctacagtcatgcaccagtgggtgaaggagttt
cacacctggtggcctcttttcagagtagctgttctacatgaaactggttccttcaccagc
agcaaggaaaggctcattccagagatcgctgcttgtcatggtatcctgataacctcatat
tcggctgtgaggaatatgcaagatgccttacagcgatacgattggcactacattatactg
gatgagggccataagatcaggaatccaaatgctggagttactactgcctgtaaacagttt
cgtactccccacaggttcatcctgtcaggctctcccatgcagaacaatttgaaggagctg
tggtctctgtttgactttgtctttcccggcaaactcgggacattacctgtcttcatggag
cagttctctgtgccaatcaccatgggtggatacagcaatgcctcacctgtacaggtccag
acggcgtttaagtgcgcatgtgtgctgagggacaccataaatccttacctactcagaaga
atgaaggcagacgtcaaggccaacctctccttacctgacaaaaacgaacaggttctgttt
tgcagattaacagaggaccagcggcaggtgtatcagagcttcttagattccaaagaggtc
taccagatacttaacggggacatgcaggtattctcaggtttgatagcactacgtaagatc
tgtaaccaccctgaccttttctcgggcggcccccggctgctgaggggaatcccggaggac
cagctaactgaggaggaacactttggcttttggaaacgctcgggcaagctgatagtggtg
gagtcgctgctgcgtctctggttcaaacagggccacagagtcctgcttttcactcagtct
agacagatgttggacatcttggaggtgtttgtgagggagaataactattcgtacctgaaa
atggacggcactaccacaatagcttcccgacagccgctcatcgctcgctacaacgaggac
aaatccatttttatcttcttgttgaccactaaagttggaggcctgggagtcaatctgact
ggagccaacagagtcatcatctatgatccagactggaatcccagtacagacacacaggca
agggaacgagcatggaggattggtcagaagcagcaagtgacggtttacagactgctaact
gcagggaccattgaggaaaaaatctaccacaggcaaatcttcaaacagtttctgaccaat
cgtgtcctgaaggacccaaaacaaagacgattctttaaatcaaatgacatctatgagctc
ttcaccctgtctgaccctgatggaggtcagggaacagagaccagtgccatatttgcaggt
acaggctctgatgtcaaagcacccaagaaacctgcgaggccaagctcatcacacacggta
aaccacggtacccatgcacataaacactcctcagcaaaccaaaatgaaactggtacagac
agcaaacactcctcaacaaacattcctgtattaagacagggaaatacctcaccgtgcagt
aaaaactctcagggtacgccaaatgtcccgacggacagtcaaaagaccaaccaaaatggc
gtggatgtagaaccacatattttaacaaatgtgcagcatacaggacaaaataacagagac
tgggatgcagccaagccagcagtcaaaaactcacactcacctagctctcaccaacacaga
gacaaagactctgccctgactagcccacagaaacacagagaaaagaggaagcattgcgac
tcagctgacttggacaaaaacaaacgcaagaaacgcaaacactccaaagatgctcggttt
gaaggccgccgcatttctcacttggtgaagaaaaggacttataagaaagaggataatgca
gacaatgagagagaggaccagaagcaatcggacgattatgtcttggcaaagctcttcaag
aaatctggtatccacagtgtgatgcagcatgacaccatcatggagtcctccaatcctgac
tatgttcttgtggaggcagaagctaacagggtggccaaagatgccctgaaagcccttaag
gtttctcgccagcagtgcagactgccctacaacagaccccctcctccaccagcaaggaag
cgttttggacaaaaaaagaattctctcttggttgcaccttcagttcagtctgtccctact
ccgagcaaatgcaaggatgctgctattgttaagaaatctgtgtcaaagaagcctggctct
ggagctcattttagtggggaggtggcagaaagtgagtcaaactccgccccactctcttcc
tcctccctgctggccaagatgaaagcccgtaatcacctcagcattccctctagccaaaga
gaagaagcagaggatgaggaggacggctctggagctcctctacaaaggagctctccccca
gctccgcccactgagcatgacgagctgttggtggatctgcgcaacttcgtagccttccag
gcaaatgtggacggacaggccaccacccaggaagtgcttgagtatttcaaaccaaggcta
acccaggaacaggcgcctgtcttcagagaactgctaaggagaatctgtgacttccatagg
acctctggtcaggagggcatatggagactgaaggagcacttccactga
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