Lates calcarifer (barramundi perch): 108888357
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Entry
108888357 CDS
T04895
Name
(RefSeq) AT-rich interactive domain-containing protein 2
KO
K11765
AT-rich interactive domain-containing protein 2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108888357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108888357
03021 Transcription machinery [BR:
lcf03021
]
108888357
03036 Chromosome and associated proteins [BR:
lcf03036
]
108888357
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
ARID
108888357
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108888357
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
108888357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARID
RFX_DNA_binding
FOXP-CC
Pox_D5
Motif
Other DBs
NCBI-GeneID:
108888357
NCBI-ProteinID:
XP_018539844
UniProt:
A0A4W6FYH1
LinkDB
All DBs
Position
LG18:15121398..15153157
Genome browser
AA seq
1691 aa
AA seq
DB search
MANSTGKNLLDQRRKGQAFLDELRQFHQSRGSPFKKIPIVGGKELDLNALYIRVVSLGGF
AKVSDKNQWTELGEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDEEAQPGNPKA
FLPIGAIPNSYNYQQHIVSDYLRQSYGLSTDFVPPCDYNKLVLSLLSGLPNEVDFAVNVC
TLLSNESKHAMQLDKDPKLVTLLLAHAGVFDDSLGSFSGVFGTDWKEKTCRDFVRFWKEV
VEDAEVRELIWDKSSPAQDGTSCEERWQSLFHPPRNPGISDMEAQRVLQIAVILRNLSFE
EANVKLLAANRTCLRFLLLCAHCNLISLRQLGLDTLGNVAAELQLDPVDFRTTHLIFHTI
TKCLMSRDRFLKMRAMEILGNLSKAEDNGVLICEYVDQDSYREVMMLLTLPDLMLLMASL
EVLYLLAQLGEVPCSKIASVDHSIDLLVRLVSVDLHTFGPDALTAVRLIEHQANADQAAE
VRPQLVEQVPAAVQGPAAPVTRVPVQSAQPPPGIVELDGEKFTLQWLNAHFETYPEGSVS
RSEMYSEYLATCSKMGRSNILNSTGFLKCLRTVFPNHTMRRQEEPKANGQVHILLVGLRR
RSIPLPIQLYYQQPQQQQQQSPAAAPPPPAARHEAPGDPQAPPPGLPPGHPILGPQFVRA
SGPSLSTGGAAPSMALTAQEPPHASHPTVSRHSVPPQVPPPNPLAAAQQQQVRPGPVVQI
PTSAPATQNHSPQNPAASHTAQQQHSPMLPTGTPVTLFQQVPQGHILTARVQGVCPPITQ
HPPLPQTPPLSGPQGGAPQVEPQCVAAASAPSSIQVGGGQLSIAGVPNSQGSRVAFQNIA
PKPAPNQSGGPAATIATPNQQPQQQAQSVVIVSPNPQQSPAYTPAIHQIVLANPSAIPGA
QTIQIAGQPGAASSPCPPPASHSTTQVQPNQTVSHALSMKRHQQQQHQQQHQQQPPLQII
SQPPPSQPTSTESSLIKQLLLPMRGPSTPGGKLILPAPQVPPPNSTIAPSPQVIYQAGYS
TQNPSPQPQQLNVQLVPGQLPAAGAPALQAVQLLPGQLISTSSPGAATIIQGPTATGQVT
FTVVPNTGFTTSTAAVAAVSQGAVAPVVASPPFSTGTVPHHTPSAPPPPPPPPLPAPLRG
DKIICQKEEEAKDATGLHIHERKIEVMENSSLEEGDSANGKTSNGDVAAGAKLLNGRKCM
ESNLPPYHSGNSQGALNGPAMESHPANGKQALSPSLNTPLEGNPDPKKTLVNGVCDFDRG
DSGGNFNKNIPNHIASKQYLGNGEVGPSEKSHGSDPLLPSPPPPQQDTAKAQQAERLANG
PQAVGNRLPSELTNGPLGPGHAVLRQQLLPNSSLPSTVTLTSQSLAASPANGVASEARGL
KRPAENEDRSTVAASSGIPNKVGVRIITISDPNNAGSSATMVAVPAGTDPSTVAKVAIEN
ATQQRNCSPTEAAGSTPTVTPSPPPTSQPAPAGNHNPHLPAQQTSAAPPEQSRKAGQNFK
CLWQSCKRWFETPSQVFYHAATQHGGKDAYGGQCLWEGCEPFPRQRLSFITHLQDKHCSR
EALLAGLKLEEQQAQSPNQTSSQTPPVAGSTPAPRAPKAIVNHPSAALMALRRGSRNLVF
RDFTDEKEGPVTKHIRLTAALTLKNIAKHSDCGRMLVKRHETHLSVLALSNMEVSTTLAK
CLYELTRSLQA
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattcgacggggaaaaatctactagatcagcgaaggaaaggacaggctttcctg
gacgagctgcggcaattccaccaaagcagaggatcgccgttcaagaagattcctatcgtg
ggtgggaaagagctggatctgaatgctctctatatcagagtcgtctctttaggtggattt
gcaaaggtctctgacaaaaaccaatggactgaacttggagaagagtttaactttcccagg
agttgttccaacgctgcatttgctttaaaacagtactaccttcgatacttggagaagtat
gagaaagtccatcacttcggcgaggatgatgaagaagcgcagccggggaatcccaaagcc
tttcttccaatcggtgcaattcccaactcttataactaccagcaacacattgtatcagac
tatctccgccaaagctatggactgtctacggatttcgttccaccgtgtgactacaataaa
ctggtgctgtctctcctctcgggcctacccaacgaagtggactttgctgttaatgtttgc
actctgctttccaacgagagcaagcacgccatgcagctggacaaggaccccaaactggtt
acattgctgctggcccacgccggtgtcttcgacgactcgctaggcagcttctccggggtg
tttgggacagactggaaggagaaaacctgccgggactttgtcaggttctggaaagaggtg
gtggaggacgctgaagtcagggagctgatctgggacaagagcagcccagcacaagatggt
acatcgtgtgaggagcgctggcagagcctcttccacccgccgcggaaccccggtatcagt
gacatggaggcccagcgggtgctgcagattgccgttatcctgcgaaacctctccttcgag
gaggccaatgtcaagctgctggcggccaaccgaacgtgcctgcgcttccttttgctctgt
gcccactgtaacctcatctcactccgacagctcggactggacacgttgggcaacgtggct
gccgagctccagctggatcctgttgactttcggacgactcatctgatctttcacaccatc
accaaatgcttgatgtccagggacaggttcctcaaaatgagagcaatggagatcctgggc
aacctcagcaaggcggaggacaatggtgtactaatctgtgagtatgtggaccaggactcg
tacagggaggtaatgatgctcctcaccctgcctgacctcatgctcctcatggcctccttg
gaggtgctgtacctgctggcccagctcggagaggttccctgcagcaagatcgcctctgtc
gaccacagcatagacctgttagtgcgactagtatcggtggaccttcacacgtttggacct
gacgccctaacagcggtgcggttgatcgagcatcaggccaacgccgaccaggcggccgag
gtccgaccgcagctggtagagcaggtacctgcagccgtgcagggaccagcagcaccggta
acaagggtcccggttcagtccgctcaaccgccacctggtattgttgaactagatggggaa
aaatttacactgcagtggctaaacgcacactttgagacataccctgagggctccgtgtca
cggtccgaaatgtactcggagtatctggccacatgcagtaaaatgggacgaagcaacatc
ttgaactccactggcttcctcaagtgtctgcggactgtgttccccaaccacacgatgcgg
cggcaagaggagcccaaggccaacggccaggttcatatccttctggtagggctaaggcga
aggtcaatccccctgcccatccagctgtactaccagcagcctcagcagcaacagcagcaa
agtccggcagcagctcctccacctccagcagcccgacatgaagcacctggagaccctcag
gccccgcctccaggcttacctcctgggcatcccattcttggaccccagtttgtacgggcc
tcaggccccagcctcagcaccggtggtgccgccccatccatggccttgactgcacaggaa
cctccccatgcaagccacccgactgtttctcgtcactcggtgcccccacaggtgcctcca
ccaaatcctctggcagcagcgcagcagcagcaggtccgacctggtcccgtggtccagatc
ccaacgtcggcaccagccacccagaaccacagcccccagaaccctgccgcatcacataca
gctcagcagcaacactcccccatgctccccacagggacaccagttacgctatttcagcag
gtaccacagggccacatcctcaccgccagggtacaaggtgtgtgccctcccatcacccag
catcctcccctgcctcaaacccctcccctgtctgggcctcagggtggagctccccaggta
gaacctcagtgtgttgctgcagcatcggcaccctcctccatccaggtgggtggtggtcag
ttaagcatcgcgggcgtgcccaattcccaggggtcacgcgttgcgtttcagaacatcgct
cccaaaccagcgccaaaccagtcaggtggaccagcagccacgatagccactcccaaccag
cagcctcagcagcaggcgcagagtgtagtaatagttagccccaacccccagcagagcccg
gcctacacccctgccatacaccagattgttcttgccaacccctccgccattcccggtgcc
cagactatccagatagcagggcagcctggagctgcttccagcccctgcccgcctcctgcc
tctcactccactacccaggtccagcccaatcaaactgtcagccacgcactgtccatgaaa
cggcatcaacagcagcaacaccaacagcagcatcaacaacagccgccgctccaaattatt
tcccagcctcctccctctcagcctacctccactgagtccagcttgatcaaacagctactg
cttccaatgcgagggccttccacgccgggaggaaagctcatcctacccgctccacaggtg
ccccctcccaacagcacgatagcccctagtccacaggtcatctaccaggcaggctacagc
acccagaatccctctcctcagcctcagcagctcaatgtccagctggttcctggccagctt
cctgctgcaggagctccagccctccaagcggtccagctcttgccaggtcagctcatttcc
acgagtagcccaggggcagctaccatcatccagggccccacggcaactgggcaagtcaca
tttaccgtggtccccaacactggcttcaccacctctactgctgctgttgctgctgtcagc
cagggcgctgtggctcctgtcgtcgcttctcctccattctctactggaacggtgccccac
cacaccccatcagctccaccaccaccaccgccgccaccactgccagctccactcagagga
gacaagatcatctgtcagaaggaggaggaggcgaaggacgccacagggctgcacatccac
gagaggaagatagaggtgatggagaactcctctttggaagagggagactccgccaacggc
aaaaccagtaacggtgatgttgcggctggtgccaagctgcttaatggtcggaagtgcatg
gagtctaatctacctccataccactcagggaacagccagggggcactaaatggcccggct
atggagagtcaccctgctaatgggaagcaggccctctctcccagcctgaacacccccctg
gagggaaaccccgacccaaaaaagactttagtcaacggagtgtgtgactttgatcggggt
gacagtggtggcaactttaacaaaaacattccaaatcacattgcttccaaacagtacttg
gggaatggggaggttggcccctctgagaagagccacggctcagacccccttctccctagt
cctcctcccccccagcaggacactgccaaagcccagcaggccgagcgcctggccaacgga
ccccaggcagtaggcaataggcttccctcggaattaaccaatggacctttggggccgggc
cacgctgtgctaagacagcaactgctccccaactcctccctcccctccactgttactctt
acctcccagagtcttgctgcctctcctgcaaacggagtggcctctgaggctcgaggcctc
aagaggccagctgagaacgaggaccgcagcacggtggcagcatcctcggggatccccaat
aaagtgggagtgcggatcatcaccattagtgaccccaacaacgcaggcagcagtgccact
atggtggcggtgccagcaggaacagacccaagcacagtagccaaagtagcaatagagaac
gccactcagcagaggaactgctcgcccacagaggcagctggctcaacgccaacggtaacc
ccatccccgccccctacatcccagcctgcaccagcgggtaaccacaaccctcacctccca
gcacagcaaacctccgcagcaccaccggagcagagcaggaaagcagggcagaacttcaag
tgtctgtggcagtcctgtaaacggtggtttgaaacgccatctcaggtgttttaccacgca
gcaacgcaacacggtggaaaggatgcatatggaggccagtgtctgtgggagggatgtgaa
ccttttccccggcagagactgtccttcatcacgcatctacaggataagcactgttctcga
gaggctttgctggctggactcaaattagaggagcagcaggcacaaagtcccaatcagact
tcttcccagactccaccagtggcaggcagtactccggcaccgcgagcgccgaaagcaatc
gtcaatcatccgagcgcagctctcatggccctacgcagaggctctcgaaacctggtcttc
agggacttcactgatgagaaagagggaccagtgaccaaacacatacgactaactgctgcc
ttaacgttaaagaacatcgccaagcactctgactgtggtcgcatgttggtaaagaggcat
gagacgcacctctctgtgcttgcgctaagtaacatggaggtttccaccacgctcgccaaa
tgcctttatgaactgacgcgctcgctccaggcttaa
DBGET
integrated database retrieval system
