Lates calcarifer (barramundi perch): 108888369
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Entry
108888369 CDS
T04895
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108888369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108888369
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
108888369
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
108888369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
108888369
NCBI-ProteinID:
XP_018539871
UniProt:
A0AAJ7PVM3
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Position
LG18:complement(15393377..15396540)
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AA seq
310 aa
AA seq
DB search
MKRGKKAEEAVADGENDNGSATAKKAKKAKEPEAPVLYDDPPDKMTSKDGREANMKITSW
NVDGLRAWVKKKGLDWVREENPDVLCLQETKCAEKDLPADITSMPEYPHKYWAVSDDKEG
YSGVAMLCKTEPIKVTYGIGKEEHDKEGRVITAEFPNFYLVTAYVPNSGRGLVRLDYRKT
WDVDFRAYLSELDVQKPLVLCGDLNVAHQEIDLKNPKGNKKNAGFTPEEREGFSQLLEAG
FTDSFRELYPEQTNAYTFWTYMMNARSKNVGWRLDYFLLSSSLLPGLCDSKIRNKAMGSD
HCPITLHIAM
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaggcaagaaggcagaggaggcggtcgcagatggggaaaatgacaatggctct
gctactgcaaaaaaagccaagaaggctaaagaaccagaggccccagttctgtacgatgat
cctcctgacaagatgaccagcaaagatggacgagaggccaacatgaagatcacctcctgg
aatgtcgacgggctgagggcctgggtgaaaaagaagggcttggattgggtgcgtgaggag
aatccagatgttctgtgcctgcaagagaccaagtgtgcagagaaagacctccctgctgac
atcacctcaatgcctgagtacccacacaagtactgggctgtctcagatgacaaggagggt
tatagtggtgtggccatgctttgcaagactgaacccatcaaagtgacctatggtattggc
aaagaggagcatgacaaggagggtcgcgtcatcactgctgagttccccaacttctacctg
gtgaccgcctatgtgccaaattccggaagaggccttgtgcgcctagattaccgcaaaacc
tgggacgtcgacttccgggcatacctgagtgagctggatgtgcagaagcccctggtgctg
tgcggcgatctcaacgttgcgcaccaagagatcgacctgaagaaccccaaggggaacaag
aaaaatgcaggcttcacccccgaggagcgcgagggcttcagccagctgctggaggccggt
ttcaccgacagcttccgcgagctctatcctgagcagaccaacgcctacaccttctggacc
tacatgatgaacgcccgctcaaagaacgtgggatggaggctcgattactttttgctgtcg
tcctccttgctgccaggcctatgcgacagcaaaatccgcaacaaggcgatgggaagcgac
cactgccccatcactctgcacatagccatgtag
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