Lates calcarifer (barramundi perch): 108888545
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Entry
108888545 CDS
T04895
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108888545
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108888545
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
108888545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
108888545
NCBI-ProteinID:
XP_018540098
UniProt:
A0AAJ7PVY2
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All DBs
Position
LG10:complement(8255926..8361631)
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AA seq
910 aa
AA seq
DB search
MCADCPTSCGEKDPICQAMNSGGGMASQTESDAGHRGEGVCQRGCGLLLSGEDLNKGGHC
CVDALRTVTDVLEERSAALEHEARMARLRWNRREQFLLAQVSTLQNEAQLAALKYQRRLH
QYMLHINSIAEQVIGYYKSDLRTTADMQSHISGEATCADGEPQEQVKAPEVNGKELSKSS
HEETVEAFRAAKDPVVVQVIRRTPSGRPHGPPQEIHVVDVCTQTDITFEHIMALAKLRPS
TPPVPDVCPFLLSDSCHSLHTMDQDYYEGTDYLSPVPADGERTEEFEYEEVELCRLSSQE
KLGLTLCYRTDEEEDVAIYVSEISPNSIAARDGRIREGDRILQINGQDVQDREEAMAALS
NDECRNIILLVARPEMQLEEAWLDDEHSEFLEQLKMEMLEEQQREEMELAALQEEQENEQ
RAEDDKPTCSTLPHHKDSVRNIKDRMESSEHNVLAHIQRRLSQCLRDNRDTHNTTSSTWL
EDKEDEDDDEMEGDRFQQLLELKCQIRNSGEYDLFYSHRSTIECSMGEQGGVQHELRMLN
EELRSIELECQNIMQAHKLRKGQQSPSMGRSAPSTKNQSLHHGEPTRGKLADINERLEKS
DKDSSSAYNTAESSRSTPLAMDRSPEHSLQRMVSLTNQRNLCSSLATGHSLSPSPIPVCR
APVPGKSSSPDHSNPSESDQTPQAEEESRGTLKPHACQIPYFSPSHSSQQRQANIPAHAR
HYQSYMQLIQQRSAVEYAQSQLSLLSVCKEPQRPINEPKMEWKVKIRSDGTRYITKRPVR
DKILRERALKIKEERSGGMTTDDDAMSEMKMGRYWSKEERKQHLVRAKEQRKRREFMQRS
RLESLKENPQSSSEGRKEVSIIELSHKKMMKKRNKKILDNWMTIQELMTHGTKAPEGAKE
HNAFLSVTTV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgctgattgcccaacttcttgcggggagaaggacccaatctgccaagctatgaac
tcaggcggcgggatggcgtcgcaaaccgagtctgacgcgggtcatcgcggcgaaggtgtt
tgtcagagaggatgcgggcttctgttgtccggcgaggacttaaacaaagggggtcactgc
tgtgtggacgcgctgcgcacggttaccgacgtgctggaagaaaggagcgcagctttggag
cacgaagcccggatggcgaggctcaggtggaacaggagggagcagttcctgttagcccag
gtgtcaactctgcagaacgaggctcagctagctgctctcaagtaccaacggagactgcac
cagtacatgctgcacatcaacagcattgcagaacaagtcattgggtactacaagagtgat
ttgaggacaactgctgacatgcagagccacatatcaggggaagcaacatgtgcagatgga
gagccacaggagcaagtcaaagcacctgaggtgaatggaaaggagttgtccaagtccagc
catgaggagactgtggaggcctttcgcgctgccaaggaccccgtcgtggtgcaggtcatc
aggcggacccccagcggccgcccccatggcccccctcaggaaatccatgtggtggatgtg
tgcactcagaccgacatcacctttgaacacatcatggcgctggcaaagctgcggccttcg
acccctcctgtgcctgacgtctgtcccttcctgctctctgacagctgtcattctcttcat
acaatggaccaggattactatgaagggacagactacctctcccctgttccagctgatgga
gagaggacagaggagtttgaatatgaggaagtggaattgtgccgactcagcagtcaagag
aagttggggttaactctgtgctacaggacagatgaagaggaggatgtggccatctatgtc
agtgagatcagtccaaacagcatcgctgccagagatggacgcatccgagagggggatcgc
attttacagattaatggccaagatgtacaagacagagaagaagcaatggctgcactctcc
aatgatgagtgtaggaacatcatactgctggttgccaggcccgagatgcagctggaggag
gcctggctggatgatgagcacagtgagttcctggagcagctgaagatggaaatgttggag
gagcagcagagagaggagatggaattagctgccttacaggaggagcaggagaatgaacag
agagcagaagatgataaacccacctgctccactctccctcatcataaagacagtgtacgg
aatataaaggacagaatggagagctcagagcataatgtactggcacacatccagagacgt
ctgtcccagtgcctgagagacaatcgggacacacacaataccaccagctccacgtggcta
gaggacaaagaggatgaggacgatgatgagatggagggtgatcgtttccagcagctttta
gagctgaaatgtcagattcgtaacagcggcgagtatgacctgttctacagccaccgcagc
accattgagtgcagtatgggggagcagggcggtgtacagcatgagctgcgtatgctaaac
gaggagctgcgcagcatcgagcttgaatgtcagaacatcatgcaggcccacaagcttcgt
aagggccagcagtctccttcaatgggccgctctgcaccctccaccaaaaaccaaagcctc
caccacggcgagcccacaaggggtaagctggcagacattaacgagaggctggagaaatcg
gacaaggacagctccagtgcctataacacagcagaaagttcacgcagtacccctctagca
atggaccgctccccagagcactcactccagaggatggttagtctcaccaaccagaggaac
ctctgcagcagccttgccactggccactctcttagcccgagccccatcccagtatgccgt
gctccagtcccagggaagagcagcagccctgaccacagcaatccatctgagtcagaccag
acacctcaggctgaggaggaaagcagggggacattaaagccacatgcttgccagattcct
tacttctctccatcccacagttcccagcagaggcaggccaacatcccagctcatgctcgc
cactaccagagctacatgcagctgatccagcagcgctcagctgtagagtatgctcagagc
cagctcagcctgctcagtgtgtgcaaagagcctcagaggcccattaatgagcccaagatg
gagtggaaggtgaagatccgcagcgacggcacacgttacatcaccaagaggcctgtgaga
gacaagatcctgagggagcgagccctaaagattaaagaagagcgcagtgggggaatgacc
acagatgatgatgcgatgagtgaaatgaagatggggaggtactggagtaaagaggaaaga
aagcagcacctggtcagggcaaaagaacagagaaagagacgagagttcatgcagcgtagt
cggctagaaagcttgaaagagaatcctcagagcagcagcgagggccgcaaggaagtcagc
attattgagctcagccacaagaagatgatgaagaaacgcaacaagaagatcctggacaac
tggatgaccatccaggagctgatgactcatggtactaaggcccctgagggagccaaggag
cacaacgccttcctatcagtcactactgtataa
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