Lates calcarifer (barramundi perch): 108888685
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Entry
108888685 CDS
T04895
Symbol
dync1i2a
Name
(RefSeq) dynein, cytoplasmic 1, intermediate chain 2a isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04145
Phagosome
lcf04814
Motor proteins
lcf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108888685 (dync1i2a)
09142 Cell motility
04814 Motor proteins
108888685 (dync1i2a)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108888685 (dync1i2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108888685 (dync1i2a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108888685 (dync1i2a)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
108888685 (dync1i2a)
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
108888685 (dync1i2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WDR55
Dynein_IC2
Beta-prop_EML
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_NUP159_NUP214
WD40_RFWD3
Beta-prop_SPT8
Nbas_N
Beta-prop_IP5PC_F
Beta-prop_DCAF4
HB_ELP1
Motif
Other DBs
NCBI-GeneID:
108888685
NCBI-ProteinID:
XP_018540297
UniProt:
A0AAJ7V8B8
LinkDB
All DBs
Position
LG1:complement(18298774..18316539)
Genome browser
AA seq
627 aa
AA seq
DB search
MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKEADQLKDAALHQDDSDLERKRRDAE
ALLQSMGITPEVPVVPPPMSPTAKSAGTPSEAGSQDSDGAAGPRTLHWDSDPSTLQLHSD
SELGRGTPKLGMAKVTQVDFPPRETVSYTKETQTPVMTQQKEEEEEEEEIAPPQPVVETP
TEKPDQKEEEEAPPHELTEEEKLQILHSEEFVNFFDHSTRIIERALSEHVDLFFDYSGRD
LEEKEGEIQAGAKLSLNRQFMDERWSKHRVVTCLDWSPQYPELLVASYNNNEDAPHEPDG
VALVWNMKYKKATPEYVFHCQSAVMSAAFAKFHPNVVVGGTYSGQIVLWDNRSNKRTPVQ
RTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKMCSWSLDMLSQPQDSMELVFKQSKA
VAVTSMSFPLGDVNNFVVGSEDGSVYMSCRHGSKAGISEMFEGHHGPITGIHCHTAAGPL
DFSHLFVTSSFDWTVKLWSTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGVGHLDL
WNLNNDTEVPTASVTVEGNPALNRVRWAHSGREIAVGDSDGRIRVYDVGEQTAVPRNDEW
TRFVRTLAEINENRDDAEELAAQRLAA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaagagtgagctgaaagcagagcttgaaaggaagaagcaacgtttggcacaa
atcagagaggaaaagaaaaggaaggaggaggagcgcaaaaagaaagaggcggaccagttg
aaagatgctgcacttcaccaggacgactctgacctggagaggaagaggcgtgatgctgag
gccctgttacagagtatgggcataactccagaagttcctgtcgtccctcctcccatgtct
ccaactgccaaatcggcgggcacgccaagtgaggcagggagtcaggattctgatggagcc
gcaggacccaggactctgcactgggactctgacccgtctactcttcaacttcactctgat
tctgagctggggcgaggaactccaaaactgggaatggccaaagtcacacaagtggacttt
cctcctcgtgaaactgtgtcctacacaaaagagacccagacacctgtcatgacccaacaa
aaagaagaggaagaagaagaggaggaaattgcccctcctcaaccagtagttgagactcca
actgagaagccggaccagaaggaggaggaggaagcacccccccacgagctaacagaggag
gaaaaactccagatcctgcactcggaggagtttgtgaatttctttgaccacagcactcgc
attattgagcgggctctatcagagcatgtggacctcttctttgactacagtggtcgtgac
ctggaggagaaggagggtgaaatccaggccggagcaaagctctctctcaacaggcagttc
atggatgagcgctggtccaaacaccgtgtcgtcacctgcctcgactggtccccccagtat
cctgaactcctggttgcctcatacaacaacaacgaggacgctcctcacgagccagatggt
gtggcgttagtgtggaacatgaagtacaagaaggctacaccggagtacgtcttccactgt
cagtctgctgttatgtcggctgcttttgccaagttccaccctaacgttgtggtggggggc
acatactcagggcagattgtcctgtgggacaacaggagcaacaagaggaccccggtgcag
aggactcccctgtctgcagcagcacatacgcacccagtttactgtgtgaatgtggtcggc
acccagaacgcccacaacctgattagcatctccactgatggaaagatgtgctcctggagt
ctggacatgctttcacagccacaggacagcatggagctggtgttcaagcagtccaaagct
gtagctgtcacctccatgtctttccctctcggagatgtcaacaatttcgtggtgggcagc
gaggacggctctgtctacatgtcgtgtcgtcatggaagcaaagcgggcatcagcgagatg
tttgagggccaccacgggcccatcacagggatccactgccacacagctgcagggcccctg
gacttctcccacctgttcgttacctcctctttcgactggactgtcaagctgtggagcacc
aagaacaacaagcccctgtactcgtttgaagataactcagattacgtgtacgatgtcatg
tggtctccaactcaccctgctctgtttgcttgtgtggatggagttggacacctggacctg
tggaacctcaacaatgacactgaggtccccactgctagcgtcacagtagagggtaaccca
gccctcaacagggtcagatgggctcattctggcagagaaatcgccgtgggagactctgat
ggacgaattcgtgtgtacgatgttggagagcaaactgcggtcccacggaacgacgagtgg
acccgttttgtccgcacactggcagagatcaacgaaaacagggatgacgcagaggagctg
gcagctcagcgcctggctgcctga
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