Lates calcarifer (barramundi perch): 108888772
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Entry
108888772 CDS
T04895
Name
(RefSeq) sodium/calcium exchanger 3 isoform X1
KO
K05849
solute carrier family 8 (sodium/calcium exchanger)
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04020
Calcium signaling pathway
lcf04260
Cardiac muscle contraction
lcf04261
Adrenergic signaling in cardiomyocytes
lcf04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
108888772
04020 Calcium signaling pathway
108888772
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
108888772
04261 Adrenergic signaling in cardiomyocytes
108888772
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108888772
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108888772
Transporters [BR:
lcf02000
]
Solute carrier family (SLC)
SLC8: Na+/Ca2+ exchanger
108888772
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Others
108888772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calx-beta
Na_Ca_ex_C
Na_Ca_ex
Motif
Other DBs
NCBI-GeneID:
108888772
NCBI-ProteinID:
XP_018540446
UniProt:
A0AAJ7V8B4
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Position
LG14:6172737..6261587
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AA seq
1000 aa
AA seq
DB search
MTGSRPGLLPREPNRIWTPPHTEPTQKNPVESSEGLAPSAEMAPAAMSMPPSSLTSFRPS
RLSSSLFFFSLSFFLLLSCPGSVHASSSEKNCSASGDVCQEGVVLPVWNPQNPSVGDKVA
RAIVYFVALIYMFLGMSIIADRFMSSIEVITSQEKEITIKKPNGETTTATVRIWNETVSN
LTLMALGSSAPEILLSVIEVCGHNFEAGSLGPSTIVGSAAFNMFIIIALCVYVVPDGETR
KIKHLRVFFVTAAWSIFAYIWLYVILSVFTPGVVEVWEAVLTLLCFPLCVVQAWVADRRL
LFYKYVRKRYRADKNRGIIIESEGGADGGIGGLDGGGGALGPGGFTKMDMLELDGQMALN
CHSGMDGGLMEEGGAKDEEDEARRDMARTLKELKQRHPDKDMEQLIEMANYQVLMQQQKS
RAFYRIQATRMMIGAGNILKKHAADQARKVVSSHETQAQEDDPHTIRMEFEPSLYQCFEN
CGSLKLTVARHGGDPGVTVKVDYRTEDGTANAGSDYEFAEGTLLFKPGETLKEITVGVID
DDIFEEDEYFYVHLSNPRVVGYPEIGTAPLDASATPKAVLGDNHTATVTIYDDDHAGIFT
FESASHRVSESVGVMEVKVLRTSGARGLVAVPYRTLDGTAKGGEDYELAAGKLEFQNDET
MKIIEVKIIDDEEYEKNKTFTIELGEPVLLEIGQKHGDSNENKPLVGAEEEEVAKMGCPS
LGEHTQLEVIIEESYEFKRALNTLLRRAQKSTVDKLIKKTNLALVVGSSSWREQFVSAVT
VSAGDDDEEESGEERLPSCFDYIMHFLTVFWKVLFAFVPPTEYWNGWACFIVSISLIGVL
TAVTGDLASHFGCTIGLKDSVTAVVFVALGTSVPDTFASKVAAIQDQYADASIGNVTGSN
AVNVFLGIGVAWTIAAIAWRAEGKPFKVDPGNLAFSVTLFTILAVVCVITLLYRRRASVA
GGELGGPRTCKLLTSLLFVSLWLVYILLASLEAYCHIPLF
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgaccggatcccgacccgggcttcttccaagagaaccgaaccggatttggacgccaccc
cacaccgagccaacacagaagaacccagtagagtccagtgaaggcctggctccgtcagca
gaaatggctccagcagccatgtctatgcctccatcctctctcacctccttccgcccatcc
cgcctgtcctcatccctcttcttcttctccctctctttctttctgctcctgtcatgtcct
ggatcggttcacgcaagttcatctgagaaaaattgttcggctagtggagacgtctgtcag
gaaggagtggtcctgccagtgtggaaccctcagaacccctctgtaggggacaaagtagca
cgggccattgtttatttcgtagcgctcatctacatgttcctgggcatgagcattatagcg
gatcgattcatgtcgtctatagaggtcataacctcccaggagaaggagatcaccataaag
aaaccgaatggtgagaccaccacggccacggtcaggatctggaatgagaccgtttctaat
ctcactctaatggctttgggttctagtgccccagagatactgctgtctgttattgaggtg
tgcggtcacaatttcgaggccggctctctgggtcccagcaccatcgtgggcagtgctgcc
ttcaacatgttcatcatcatcgccctgtgtgtgtacgtggttcccgacggagagacacgc
aaaattaaacaccttcgggtattttttgtcacggcagcatggagtatctttgcctacatc
tggctctatgtaattctgagtgtcttcacgcctggagtggtggaggtatgggaggcagtg
ctgaccttgctctgcttccccctctgcgtggtccaggcctgggtggctgaccgccgcctc
ctcttctacaagtacgtccgcaagcgttaccgtgctgacaagaaccgcggcatcatcatt
gaatctgagggaggggcggatggagggataggaggcctggacggaggaggaggagcgcta
ggtccgggtgggttcactaagatggacatgctggagctggacggacagatggcattgaac
tgtcacagcgggatggatggagggttgatggaagagggaggagcgaaggatgaggaggac
gaggccaggagggacatggctaggaccctgaaggagctgaagcagaggcacccggataaa
gacatggagcagctgattgagatggctaattatcaggttttgatgcagcagcagaagagc
agagcgttctaccgtatccaagcaaccaggatgatgatcggcgccggcaatatcctcaag
aagcacgctgccgaccaagctcgcaaggtggtgagcagccatgagacccaggcccaggag
gacgaccctcacaccatcaggatggagtttgaaccctctttgtaccagtgcttcgaaaac
tgtggctccctgaaactgactgttgccagacatggaggagaccctggagttactgtcaag
gtggattatcgcacagaggacggtacagcgaacgcaggttcagattatgagtttgccgag
gggacgctcctgtttaagcctggagagaccctcaaagagatcacagttggagtgattgat
gacgacatctttgaggaggatgagtatttctacgtccaccttagtaaccctcgggtggtt
ggttatcccgagatcggcactgcccctctggatgctagtgccactcccaaagccgtgctg
ggtgacaaccacacagccacagtgaccatctacgatgacgatcacgcaggtatctttacc
tttgagagcgccagtcacagggtgagcgagagcgtaggagtgatggaggtgaaggtactc
aggacttcaggggcccgaggcttggtagctgtcccctatcgaaccctggatggcaccgct
aaaggaggggaggactacgaactggctgctggcaagctggagtttcagaacgacgagaca
atgaagatcatcgaggtgaagattattgacgatgaagagtatgagaagaacaagaccttc
accatcgagctgggagagccggttctgttggagataggacagaaacatggtgactccaat
gagaacaagccattggtgggggcagaggaggaggaggtggctaagatgggctgtcccagt
ctgggtgaacacacacaactagaagtgatcatagaagagtcctacgagtttaagagagca
ttaaatacacttcttaggagggctcaaaagagtacagtagataagctgatcaagaagaca
aacctggcgttggtggtgggaagcagcagctggagggagcagtttgtcagtgctgttact
gtcagtgcaggagatgatgatgaggaggagagtggggaggagcggctgccgtcctgcttt
gactacatcatgcacttcctcaccgtcttctggaaggttctgttcgccttcgtcccaccc
acagagtactggaacggctgggcctgcttcatcgtctcaatatcacttatcggcgtcctg
acagcagtcaccggcgatctggcctcacactttggctgcacgataggactgaaggactct
gtgaccgctgtggtgtttgtggcgctgggaacatcagtgccagacacattcgccagcaaa
gtcgctgccatccaggaccagtacgcagacgcctccatcggcaacgtcacaggctccaac
gccgtcaacgtcttcctgggtattggcgtggcgtggaccatcgcagccatcgcctggcgc
gcagagggcaagcccttcaaagtggacccgggaaacctggccttctccgtcaccctcttc
accatcctggccgtggtgtgcgtgatcacgctgctgtaccggcggcgggcgtcggtggct
ggcggcgagctgggcggaccgcggacttgcaagctgctaacgtcgctgctgttcgtctcg
ctgtggctggtttacatcctgctggcttcactggaggcctactgccatataccactgttt
taa
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