Lates calcarifer (barramundi perch): 108888811
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Entry
108888811 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108888811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108888811
Membrane trafficking [BR:
lcf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108888811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
ANAPC4_WD40
Beta-prop_EML_2
WDR55
Beta-prop_HPS5
Beta-prop_WDR3_1st
EIF3I
WD40_Prp19
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
108888811
NCBI-ProteinID:
XP_050923271
UniProt:
A0AAJ8AZP3
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MEDTLPIDDKEFDIPQVDTPPTLESILNEVKYMLLFDCYTTLYLLHQTLPTLGGYEGGTI
CVGGHLRTKTQTTWMLTPVTHPLWPALDSGDPSTPSTFMGLFLRHSLLKGISAQIVSAAD
KVDAGLPTAITVSGVIAVGTSHGLALVFDTNQALRLCLGTKTTGAEFGAVSALSINQDCS
RLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGGSVFELA
FRRVMGMRSCDSRCLFSGSKGEVCCIEPLRAPPDLRDHPITHYSLLAMASLTKILVIGLK
PSLKVWMTFPYSKSDPSSVPQLAWQFVPVQKTVNPILAFCKGDTVHFLLVKKEETGTIHV
IKQRQLHLSCDIISLSWINSRTLVLVDSHEKLHVVDRPSQEVLETLDLEQVQLVYNSRHF
KSLATGGNVSQALALVGEKACYQSVSSYAGQIVYLGTKSAHIMTLRNWRERIDFLLKQEH
FVEALSLAWSFHEGTAKAVVGLFGDPVKRKAVVDDKMVEILCQFAENALKKCPEQGKIQV
MEQHFHDVIPVLVDYCLLLQRADLLFNQLYARLAENTVAKGVFLESLETYIVADRLGHLT
TPIMRDLLAHYHSNGMMDSLERCIVHLDVTSLDIQQVVRVCWENQLYDAMIYVFNSGMND
YITPMEKLFAVIGPPLREGRNLTDEEVVMGNKLLVYISCCLAGRAYPLGDIPEDLVVQVK
NQVFEFLIRLHSADSSEEEEVFPFIRTLLHFDTREFLNVLAMTFEDFKNDKQALEYQQRI
VDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCCPDDDSRH
TERQQ
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaccctgccaatcgatgataaggagtttgacattccccaagtggacacacct
cccacactggagagcatcctcaatgaggtcaagtacatgttactctttgactgctacact
acactgtacctactgcatcagacactgccaacactaggaggatacgagggaggaaccatt
tgtgttggaggacacctgcgtactaagacacagacaacatggatgctcactcctgtgaca
catcctctctggccagctctggacagtggagaccccagcacaccctcaacgttcatgggt
ctgtttcttcggcacagcctgctgaagggcatctctgcacagatcgtctctgctgctgac
aaagtggatgctggactgccaactgctataacagtgtcaggtgtaattgctgtgggaacg
tctcatggcctggctctggtgtttgataccaaccaggccctgcgactctgtctgggtacc
aagacaactggggcagagtttggagctgtctctgccctcagcatcaaccaggattgttca
cgacttctctgtgggtttgccaaaggacagattacaatgtgggatctagccaatgggaaa
cttctgagaactatcactgatgcccaccctccaggaacagctatactgcatgtgaagttc
acagatgacccaactctcgcggtgtgcaatgacagtggaggatctgtttttgagctggcc
ttcaggcgggtgatggggatgcggtcctgtgactctcgatgtctcttcagtggttctaaa
ggggaggtttgctgtattgaaccactgcgtgctcctccagacttaagagaccatcccatc
acacactactctctgctggctatggcttctctcactaaaattctggtcattggactgaag
ccttccctgaaagtctggatgacttttccatacagcaagtctgatccgtccagtgttcct
cagctggcctggcagtttgttcctgttcagaagacagtcaacccaatcctggctttttgc
aaaggagacacagtccacttcctcctggtgaagaaggaggagacagggaccatccatgtc
atcaaacaaagacagctccacctcagctgtgacatcataagcctgagttggatcaacagt
cggacactggtcctggtagacagccatgaaaagctgcatgttgtggaccggcccagtcag
gaggttttggagactctggacttggagcaggtgcagctggtctataacagccgacatttc
aaatcgctggccactggagggaatgtctctcaggctctggctttagttggagaaaaggcc
tgttaccagtcagtctccagctatgcaggacagatcgtctatttgggcaccaagtcggct
cacatcatgactctaaggaactggagagagcgtatagacttcctgctgaaacaggagcat
tttgttgaggcactctccttggcctggtccttccacgagggaactgctaaggctgtggtt
ggcctgtttggagatccagtaaaaaggaaagcagtggtagatgacaagatggtagagatc
ctttgtcagtttgcagagaatgctttgaagaagtgtccagaacaaggcaagatccaagtg
atggagcaacatttccatgatgtgattccagtcctggtggattactgccttctgctgcag
agagccgacctgctgttcaaccagctgtatgctcggctggcggagaacacggttgctaag
ggtgttttcctggagtcgctggagacgtacattgttgcagaccgccttggtcacctcacc
acacccatcatgagggacctcctggctcattaccatagcaatggtatgatggacagcctg
gagagatgcattgtccatctggatgtcaccagcctggacatacagcaggtggttcgagta
tgctgggagaaccaactgtacgatgcaatgatctacgttttcaacagcggcatgaatgac
tacattacacctatggagaagctctttgcagtgattggaccaccacttagggaggggagg
aacctaacagatgaagaagtggtgatgggaaacaaacttctggtgtacataagctgctgt
cttgcaggcagggcatatcctctgggagatatccctgaagaccttgtggttcaagtcaag
aaccaggtgtttgagttcctgatccgtcttcattcagctgactcgtcagaggaggaagag
gttttcccatttattcgtactctcctccactttgacacccgggagttcctcaatgtcctg
gccatgacatttgaagacttcaagaatgacaagcaggctcttgagtaccagcagaggata
gtagacatcttactacaggtgatggtggacaatccagactttactccctcccaggtggga
gggctcttcacctttttggctcgacagttggccaaaccagataacacactttttgtgaac
aggaagctctttgatcaggttctggagttcctgtgttgcccagacgatgactcccgacac
actgagaggcagcag
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integrated database retrieval system
