Lates calcarifer (barramundi perch): 108888817
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Entry
108888817 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-6
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108888817
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108888817
BRITE hierarchy
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
108888817
NCBI-ProteinID:
XP_018540505
UniProt:
A0AAJ7PWH9
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Position
LG2:complement(2334857..2468683)
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AA seq
779 aa
AA seq
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MEGFLRSSFLLSRVMSSKQATSPFASVVDGDDAMSQEHLSWEKEESAEAHGTPQLPLHSL
LHGKAHPDEMQLSSVPPESDWDSLVSAQQRMESDSNKVCSLYSFRNNSTSPHKPEEGARE
RSDLLSGSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDESSCMEKLLSKDWKEKMER
LNTSELLAEVKGTPESLAEKEHQLSTMITQLISLREQLLAAHDEQKKLAASQMEKQRQQM
ELARQQQEQIARQQQQLLQQQHKINLLQQQIQVQGHMPPLMIPIFPHDQRTLAAAAAAQQ
GFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKMPPL
PQPLNASGPISPSSLKNDKSSSSPITQVKEEGTQPLNLSARPKTTELVKSPTSPTQNLFP
GSKNSPNSLLGKGGIPSPLGVGLGRGSSLDILSSLNSTALFGDQDTVMKAIQEARKMREQ
IQREQLQHHQQGMEAKLSALSSVGLNNCRVDKERAHFESIGHHLGKLGEEGKIGHRVIDL
TRPEDLDGGAGSTEARVFRESRGRNNNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSN
ISKILGSRWKAMSNQDKQPYYEEQARLSKLHLEKYPNYKYKPRPKRTCIIDGKKLRIGEY
KQMMRSRRQEMRQFFTVGQPPQIPITTSASMVYPGAISMATTTPSPQMTSECSSASASPE
PSIPVIQSTYNMKLEPNTMANNSEPVNGEDEMDMYEDFEDEPKSDYSSENDTQEPVSAN
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggagggctttctacgtagcagctttttactgagcagagtcatgtcttccaagcaagcc
acatctcccttcgcctctgtggtcgatggagatgatgccatgagtcaggagcacttgtct
tgggagaaagaggagagtgccgaagcccacggcacaccacagctgcccctgcacagcctg
ctccatggaaaagctcatcccgatgaaatgcagctcagcagcgtaccgccagagagtgac
tgggacagcctggtgtcagcccagcagcgtatggaatctgacagcaataaagtatgttcc
ctgtactccttccggaacaattctacttccccacacaagccggaggagggggcccgggag
cgaagtgacctgctgagcggatcagcgtttggaactccggagcgccgcaaaggaagcctg
gcagatgtagtggacacgctgaagcagaagaagctggaggagatgacaaagacagagcaa
gacgaatcctcatgcatggagaaacttctttctaaagactggaaagagaagatggagagg
ctcaacaccagcgaactattggcagaagtaaaaggtactccagagagcctggcagaaaag
gaacaccagctctccacaatgatcacccagctgatcagcctgcgagagcagcttctggct
gcccacgacgaacagaagaagctcgccgcctcacagatggagaaacagaggcagcaaatg
gagttagctcgtcagcagcaggagcagattgcaagacagcagcagcagcttctgcagcag
cagcacaaaatcaacctcctccagcagcagatccaggtccagggtcacatgcctccgctc
atgatccccatttttccacacgaccaacgcactctggcagcagccgccgccgcccagcaa
ggctttctcttccctccgggaatgtcttataagccaggtgataactacccggtgcagttc
attccatccacaatggcagctgcagcagcgtcaggactcagccccctccagcttcagcaa
ctgtatgccgcccagcttgccagcatgcaggtctctcctggagccaagatgcctccgctc
ccccagcccctcaatgcgagcgggcccatttctccctcctctctgaagaacgacaagagt
tcctccagtcccatcactcaagtcaaggaggaaggaacacagccgctcaacctgtctgct
cggccaaagacgacagaactggtcaaatcccccacatccccgacacaaaacctgttcccc
ggcagtaaaaacagccccaacagtctccttggcaagggtggcatccccagcccgctcgga
gtaggcctgggacggggttcgtctctggatattctgtccagcctaaactctactgcgctg
ttcggggaccaggacacggtgatgaaggccatccaggaggctcggaaaatgagggagcag
atccagagggaacagctgcaacatcaccagcaaggcatggaggcgaagctgtccgccctc
agctcagtgggcctcaacaactgcagagttgacaaggagagggcacattttgagagcatt
gggcaccacctcgggaagctgggtgaggaagggaagatcggccacagagttattgacctc
accaggccagaggatctagatggaggtgctggatctactgaggcgcgagtcttcagggaa
tcccgaggaaggaacaacaacgaaccccacattaaaaggccgatgaatgccttcatggtg
tgggccaaggatgagcgacgcaagatcctccaggccttccccgacatgcacaactccaac
ataagcaagattttgggttctcggtggaaggccatgtctaaccaggacaagcagccatac
tacgaggagcaggcccgtctgagtaagctccacctagagaagtaccctaactacaagtac
aagccgcggcctaagaggacctgcatcattgacgggaagaaactccgcattggagagtac
aagcagatgatgcgctcacggcgacaagagatgaggcagttcttcactgtggggcagcca
ccacagattcccatcactaccagcgccagcatggtctatcctggggccatcagcatggcg
accaccacaccctcacctcagatgacatcagagtgctcgagcgcctcagcgagtcctgag
ccatccattcctgtcatccagagcacctacaacatgaagctagagcccaacaccatggca
aacaacagcgagccggtcaacggcgaggacgagatggacatgtacgaggatttcgaggat
gagcccaaatcagactatagcagtgaaaatgacacacaagagccagtcagcgccaactga
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