Lates calcarifer (barramundi perch): 108888848
Help
Entry
108888848 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: small conductance calcium-activated potassium channel protein 1-like
KO
K04944
potassium intermediate/small conductance calcium-activated channel subfamily N member 3
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108888848
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
108888848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SK_channel
CaMBD
Ion_trans_2
Ion_trans
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
108888848
NCBI-ProteinID:
XP_050923532
UniProt:
A0AAJ8DLI8
LinkDB
All DBs
Position
LG3:14804887..14811679
Genome browser
AA seq
683 aa
AA seq
DB search
MEHSPSMNLSVVDGDEVEDQRPLLPPRMIPPPQACTPQCGIHHTVQTSSDHTVWLDRTQA
MATTPLYNGHLYVTPSPRSNRRGDKAKGKEKKCEKRSGGSRQNPGHKERNHQCKAKNAGS
HRLQEKVTSFTDIPVSPCGSPFKGPSRSHLDVRDAEGRGRRKSGNITLEMHDRQSLPEII
ITSKDDDLQPHSEMSQYRQDLSGGKGLLPGAECPVPSPSCSLQPSPKHKTDSKDDHERKT
RTIGWRLVCRRALFLRRQRLADCALAVGLFGVVMMVMETELSWSVYSKSSIYSLTLKSII
SLSTIILLGLIIAYHCCEVQLYVHDIGAEDWRIAMTTDRLALIALELAAVAIHPYPVGLL
DYFQQTKARLSLSETELEIILALPMFLRLYLLGRAMMLHSRLFTDTASRSIGALNKIHFN
TRFVGKTLMTTYPGTVLMIFSVSLWIVAAWGLHVCERHHNYRDLSSNYMEALWMVSVTFL
SIGYGDVVPHTYCGRSICLLTGIMGAGCTVLVVAVVARKLELTRAEKHVHNFMMDSHITK
RIKIAAANVLRETWLIYKHTKLSRERDHTRVRMHQRKLLLAIHQLRRVKMEKRTLADQGN
TLVDLCKMQNLVYDVLSEVQGCRGELDMHIHSLEKHVEELREGFRSLMPLLSSTLSTQNS
SIRHLLREREVKTETASASGSDR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggagcactccccgtctatgaacttgtcagtggtggatggagacgaggtggaggaccag
cgccccctcctcccaccaaggatgattcctccacctcaggcctgcactccgcagtgcggg
atacaccacacagtccaaacatcatccgatcacacggtgtggctggacaggacccaagcc
atggccactacacctttatacaatggccacctctatgtcacaccttcgcctcgctccaac
aggaggggagacaaagccaagggcaaagaaaagaaatgtgagaaaaggtcaggggggagc
agacaaaatccaggacacaaggagcgaaatcaccagtgcaaagccaaaaatgcaggatct
cacagactccaggagaaagtcacctcgttcactgacatccccgtttctccctgcgggtcg
ccctttaagggcccgagcaggtcgcatttagacgttagggatgctgagggaagagggcgg
cgcaagtcaggtaacatcacattggagatgcacgaccgccaaagtctcccagagatcatc
atcaccagcaaggatgacgacctccagccgcacagcgagatgtcccagtatcgtcaggac
ctgtcagggggtaaaggcctgctgccgggagccgagtgtcctgttccaagccccagttgc
agtcttcagcccagtccaaagcacaagacagacagcaaggatgaccacgagcggaaaacc
cgcaccattggctggcggctggtctgcaggagggctttgtttctgaggaggcagcggctg
gccgactgcgccctggcagtggggttattcggggtggtgatgatggtgatggagacagag
ctctcctggagcgtctacagcaagagctccatttactccctcacactcaagtccattatc
agtttatctacgatcatcctgctcggcctcatcatagcgtaccactgctgtgaggtgcag
ctctacgttcatgacatcggtgcagaggattggcggattgccatgacaaccgaccgtttg
gccctgatagccctggagctggcagccgtggccattcatccctatccggtgggcctgctg
gactacttccagcagaccaaggctcgtctgtcgctgtcggagacggagctggagatcatc
ctggctctgcccatgttcctcagactctacctgctgggccgggccatgatgctgcacagt
cgcctcttcacagacaccgcatcccgcagcatcggagcgctaaataagatacacttcaac
acccgctttgtggggaaaacactaatgaccacctaccccggcacagtgctgatgatcttc
agcgtttctctgtggattgtggcagcgtggggcctacatgtctgtgagaggcaccacaac
tacagagacctcagtagcaactacatggaggctttgtggatggtctctgtcaccttcttg
tccattggttatggagacgtggtgcctcacacctactgtggacgcagcatttgcctcctc
actggtataatgggagcaggctgcactgtcctggtggtggcagtagtggccaggaagctg
gagttgaccagagcagagaaacatgttcacaactttatgatggactcccacatcaccaag
aggataaaaattgctgcagcaaatgtgctgagagagacttggcttatctacaaacacact
aagctgtcaagggaacgagatcacacccgagtccgcatgcatcagaggaagctgctcctg
gccatccaccagctgcgtcgagtaaagatggagaagaggacgctggcagatcaggggaac
acattagtggacctctgcaagatgcagaacctggtgtatgacgtgctgtcggaggtgcag
ggctgcaggggggagctggacatgcacatccacagcttggagaagcacgtggaggagctg
agggagggcttcaggagcctgatgccgctcctgtccagcaccctgtccacgcagaactcc
tccatccgacacctgctcagggagagggaggtgaagacagagactgccagtgcgagtggg
agtgacaggtag
DBGET
integrated database retrieval system
