Lates calcarifer (barramundi perch): 108888939
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Entry
108888939 CDS
T04895
Symbol
cntn1b
Name
(RefSeq) contactin 1b
KO
K06759
contactin 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108888939 (cntn1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108888939 (cntn1b)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
108888939 (cntn1b)
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
Contactins
108888939 (cntn1b)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
Others
108888939 (cntn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
C2-set_2
CsgH
Motif
Other DBs
NCBI-GeneID:
108888939
NCBI-ProteinID:
XP_018540705
UniProt:
A0AAJ7PWR8
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All DBs
Position
LG18:complement(1696207..1705254)
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AA seq
1040 aa
AA seq
DB search
MASTALLLLALSSSISLTVAVLFGEPRIFGEDATGYGPIFEEEPIDVVYTEGSPDGRISM
NCRARANPPASYRWRRDNWEIKLMEQPDEHYSLVGGNLVITNPKQKKHAGTYICVARNIY
GTVISKEARVKFGFLHEFSDEEREPVYVKEGQGAVLLCAPPKAWPEAVSYRWIYNEFPVF
LPTDRRRFVSQRTGNLYISKVEAQDAGNYSCYVSSPIIGQSVFSKFIPLIPLPPEDGEER
KYPADIRVKFPDTTALLASNITLECFALGNPIPHIVWRKVDHTDLPPNHEISESGAVLHL
YNVQYEDVGGYECEAINTKGKDWHKAWLYVESAPEWAETINNTQIDIGSEHTMRCVASGK
PFPFIRWYKDGYMYGKGELKFSSLTFDDSGMYQCIAENYWGIKYANAELRVIACAPTFEF
NPVKKQLLGAKDGRVVIECKPRAAPRPRFTWTKGKELLFNNSRISIMFDGSLEILNATKN
DEGTYTCFAENDRGKANSSGYLTITEATSITVAPEDSEVKVGDEIILSCTASYDPMLDIT
FIWAIDFRVIDFDSEWQHYERVMSEDGTGDLRIKNAQIWHEGRYTCTAQTVVDSDTAYAD
LKVVGVPGPPGVIRVEEIGDTWVKLLWSKGADHNSPILSYTIQTRHYWALYEDDWRDATT
SPTTLDGSMERAEVTDLYPWMEYQFRIIATNEYGSGEASIPSLKIKTWDAPPVVAPTDVA
GYGGRNGEIVITWTPVQPWYFYGKKFGYIVAFKPHDAYDWWYETISDPETRRYVHKDTYF
IPTEEDFQVREFQVKVKSFNVKGDGPYSLTKVIYYPRDVPTESPTDVYARPVSSTEALVW
WLPVVDTGTGLQQYIEGYQVKYWRKYDDPEPGANRIFVPATVNQTRLENMLPDSHYLIEV
RAFNGAGLGPPGEHCEMFTKRPPPPEPPRMWRYITWTGKWLYVWWDHIQYDWFGNVSFPL
YYKVMFRKTGYIYGKVYITGWHFMDFPMPQVGDYELMVRGRYEGGDGPVRKIRIMGKASM
VTPTLSLVSLVLLALCILGL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccactgctttactgctcctggccctctcctcctccatctctctcacagtggca
gtcctgtttggtgagcctcgaatttttggagaggatgcaactggttatggtcccatcttt
gaggaggagcctatagatgtggtgtatactgagggctcccccgacgggagaatctccatg
aactgcagggcacgtgccaacccacctgcctcatacaggtggcgccgggataactgggag
atcaagctgatggagcagccagacgagcactacagcctggtgggagggaatctggttatc
accaaccccaaacagaagaaacacgcagggacgtacatctgcgtggccagaaacatctac
ggcaccgtcatcagcaaggaggccagggtcaagtttggatttttgcacgagttctctgac
gaggagagagagccggtgtatgtcaaagagggacagggagcggttctgctgtgtgcccct
cctaaagcctggcccgaggcggtgagttaccgctggatctacaacgagttcccagttttc
ctgcccacagatcgccgcagatttgtctcccagaggaccggaaacctgtacatctccaag
gtggaagctcaggatgcaggaaactactcctgttacgtgtccagtcccatcatcgggcag
agtgtcttctccaaattcatccctctcatccctttaccacctgaggatggtgaggagagg
aagtacccagcagacatcagggtgaagttcccagacactactgccttgctggcctctaat
attactttagagtgctttgctctgggaaatcccatccctcatattgtttggaggaaggtg
gaccacacagacctcccaccaaaccacgagatcagtgaatcaggagctgtgcttcatctg
tacaatgtgcagtatgaagatgtgggaggatacgagtgtgaagccatcaatactaaaggg
aaggactggcacaaggcctggctctatgtggagtctgccccagagtgggcggaaaccatc
aacaacactcagatcgacattggctcagagcacaccatgcgctgtgtggcatcagggaag
cccttccctttcatccgctggtacaaagacggatacatgtacggtaaaggtgagctgaag
ttttccagtctgacttttgatgactcagggatgtatcagtgtattgctgagaattactgg
ggaattaaatatgccaacgctgagctgcgagtcatcgcctgtgctcctacattcgagttt
aatcctgtgaagaagcagctccttggggctaaagatggacgtgtggtgatcgagtgtaaa
ccccgagctgctcccagacctcgcttcacctggacaaagggcaaagagctgctcttcaac
aattcacgcatttccatcatgtttgatgggagtctggagatccttaacgccaccaaaaat
gatgagggcacctacacctgctttgctgagaatgacagaggaaaggccaacagctctggt
tatctcaccatcacagaggcgaccagcatcacggtggctcctgaagactctgaggttaag
gttggtgatgagattattctcagttgcactgcttcatatgaccccatgctggacatcacc
ttcatctgggccatagacttcagagtcattgactttgactctgagtggcaacactacgaa
cgtgttatgagcgaagacggcactggtgaccttagaataaagaacgcccaaatttggcac
gaaggtcgctacacctgcacggctcagaccgtggtggacagtgatacagcatatgctgat
ctcaaggttgtaggtgttcctgggccacctggtgtgatccgggtggaagagattggagac
acgtgggtgaagctattgtggtctaaaggagctgatcataatagccccattctttcctac
accattcagaccaggcactactgggctctgtatgaagatgactggagggacgccaccacc
tctccaaccactcttgatggtagcatggagagggcagaggtgacagacctttacccctgg
atggagtatcagttcaggatcatcgccaccaacgagtatggttccggagaggccagcatt
ccctccctcaagatcaaaacctgggatgctcctccagtagtagcgcccactgatgtggca
ggttatggaggtagaaatggcgagattgtcatcacatggacacctgtgcagccgtggtat
ttctacggcaagaagtttggttacatagttgcgttcaagcctcacgatgcatacgactgg
tggtatgagaccatctcagacccagagacaaggcgttatgttcataaagacacatacttc
attcccactgaggaagatttccaggtgcgagagtttcaggtgaaggtcaagtcgtttaat
gtgaaaggagatggaccgtacagcctcaccaaggtcatctactacccacgagatgtacct
acagagtctccgacagatgtctatgccaggccggtgtcctccacggaagctcttgtgtgg
tggctgccagtggttgacactggaacaggcctgcagcagtacattgagggataccaggtc
aaatactggagaaagtacgatgacccggagccaggagccaaccgtatatttgttccagcc
acagtcaaccagaccaggctggagaacatgctgccggactcacactacctcatcgaggtc
cgtgccttcaacggagccggcctcggaccccctggtgaacactgtgagatgttcacaaag
agaccaccaccaccagagccaccgaggatgtggcgctatatcacctggacagggaagtgg
ctgtacgtgtggtgggatcatatccagtacgactggttcggcaatgtttccttccctctg
tactacaaggtcatgttcagaaagacaggctacatctatgggaaagtctacatcactggc
tggcacttcatggacttccccatgcctcaggttggcgactatgagctgatggtgcgcggt
cgttatgaaggaggagatggaccagtcaggaagattaggattatgggtaaagcatccatg
gtcacgcccactctaagcctggtgtccttggtgctgctggcgctgtgcattctgggattg
taa
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