Lates calcarifer (barramundi perch): 108888945
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Entry
108888945 CDS
T04895
Name
(RefSeq) pseudouridylate synthase PUS7L isoform X1
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcf03016
]
108888945
Enzymes [BR:
lcf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
108888945
Transfer RNA biogenesis [BR:
lcf03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
108888945
Prokaryotic type
108888945
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TruD
R3H_PUS7L
PUS7L_N
Motif
Other DBs
NCBI-GeneID:
108888945
NCBI-ProteinID:
XP_018540709
UniProt:
A0AAJ7V8H2
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Position
LG18:1499576..1503912
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AA seq
705 aa
AA seq
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MYNQYLSTCHLSKNTAITFKALQCLDEVTMKQDSDAVNVPACFISSHEGFLGSIKTFIRD
FVVTEIDVNGQQVNKAAATETSGCASSCKNSEPAAECKDNNHSSVSHDADVSDFGVDVSL
PSPGSFDLGVILGQSVSDELEQFVLTLKDEKPTKQELSLGSFTDKHHRANVHRAVRHRFP
FLMTVTIQPEIRVREDPDYRELSQLVTEDEAEDFFRFIDAKVRGSSYTFGPDDNKEHRTA
VHHFLSRRFGKLVETKSFSDQGSTAISVRLRERGRPKKRSAEERKEEEVYTAFTLCKENL
ETLEAISYMAAALGVLPSDFTYAGIKDKRAITYQSMVVKKVSPQRLKEKTAEFEKRGMRL
SQVRSVSEPLRLGRLQGNHFDLVVRDLRPHGAGDAHPSGVGHTRLAALVKEAVENVKARG
FVNYYGPQRFGSGQSIQSDRVGLALLKEDMVSAVRLFFTPEEGDDPQSQAKRHFLQTDNA
KESLALMPLSKARERLMLRAMNRYGTGPDGCAQAWLSLPHSMRVFYPHAYCSRVWNEAVA
HRLATLGHSARRGDLVWMQEGQNRTEDAGETNSAQIHVVTDQEEQGGVYTLGQVLLPMPG
NTVKYPENAMGTWYQERLARDGLDNCRFRVGSLKLNLPGCYRPLLALPRNLSYQLHRAAC
GEGGGGGGDVTGERKQDSLTLTLSFDLDSSCYATICLREIMKCDL
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtataaccaatacttaagcacctgtcatctttctaagaatactgccattacttttaaa
gctctgcagtgtttggatgaagtgaccatgaagcaggacagtgatgctgtgaacgtcccc
gcatgtttcatatcaagccatgagggttttctaggaagtatcaaaacctttatcagagac
tttgtggtgactgagatagacgtcaatggacagcaggttaataaagcagcagcaacagag
acctcaggctgtgcctcttcatgtaaaaacagtgagcccgctgcagaatgtaaggacaat
aatcactcatctgtctcacatgatgcagatgtctctgattttggggtagatgtttccctg
cctagtccaggcagttttgatctgggtgtgattttaggccagtcggtcagcgatgagctg
gagcagtttgtgttgacgctcaaagatgaaaagccaaccaagcaggagttgtctctgggg
tccttcaccgacaaacaccaccgagctaacgtccaccgggccgtccgacaccgcttcccc
ttcctcatgaccgtcaccattcagcccgagatcagggtgcgggaggacccagactacagg
gagctctcccagctggtcacagaggacgaagccgaggacttcttcaggttcatagacgcc
aaagtgcgcgggtcgtcctacacgtttggacccgacgacaacaaagagcacaggacggca
gtccaccacttcctgagccgcaggttcgggaagctggtggagacgaaaagcttcagcgat
caggggagcacggcgatctcggtgaggctgagggagcgagggaggccaaagaagagaagc
gcagaggaacgtaaggaagaagaagtttacactgccttcactctgtgtaaggagaacctg
gagactctggaggccatcagctacatggcagcggctctcggggtcctaccgtcagatttc
acctacgctgggatcaaggataagagagccatcacctaccagtccatggtagtcaagaag
gtctcacctcaacgcttgaaggagaagacagcagagttcgagaagagagggatgcgtctg
tctcaggtccgctctgtcagcgagcctctccggctcggacgactgcaggggaaccacttt
gacctggtggtccgcgacctgagaccacacggggccggtgacgcacacccgtccggcgtc
ggacacactcgcctggcagcgctggtaaaggaagcagtggaaaatgtcaaggccagaggt
tttgtcaactactatggaccacagaggtttgggagtggacagagcatccagtctgacaga
gtaggactggctttactcaaagaagacatggtgagcgctgtgcgtctcttcttcactcca
gaggaaggcgatgatcctcagagccaagcgaagaggcacttcctccagacagataacgct
aaggagtctttggctttgatgccgctgtctaaggccagggagcggctgatgctgcgggcc
atgaaccgctacggcacaggtccagatggctgtgcccaggcctggctcagcctgccccac
agcatgagagtcttctacccacacgcctactgtagcagagtgtggaacgaggcggtggct
cacaggttggctacactgggccacagtgccaggcgaggagacctcgtgtggatgcaggaa
gggcaaaacagaacagaggacgctggagaaaccaactctgctcagatccacgttgtgaca
gaccaagaggagcaggggggagtctacacactgggacaagtgttactgccgatgcctggg
aatacggtgaaatatccagaaaacgccatggggacctggtaccaggagaggctggccaga
gacgggctggacaactgccgcttcagagtcggcagcctcaaactgaacctgcctggctgc
taccgccccctgctggccctgccgcgcaacctcagctaccagctccacagagcagcctgc
ggggagggaggaggaggaggaggagacgtgacaggagagaggaagcaggactcactcact
ctcaccttaagctttgacctagactcctcctgctatgctaccatctgcctcagagagatc
atgaagtgtgacctgtag
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