Lates calcarifer (barramundi perch): 108888957
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Entry
108888957 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: nipped-B-like protein
KO
K06672
cohesin loading factor subunit SCC2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
108888957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108888957
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
108888957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
HEAT_EZ
HEAT
Cnd1
Cnd3
Motif
Other DBs
NCBI-GeneID:
108888957
NCBI-ProteinID:
XP_018540724
UniProt:
A0AAJ7PX07
LinkDB
All DBs
Position
LG9:complement(11041766..11062027)
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AA seq
2678 aa
AA seq
DB search
MNGDMLHVPITTLAGIASLTDLLNQLPLPSPLPATTAKSLLYNGRISEEVSSLLVCPDEN
LVTQLAHSLNQVSTEHIELKDNLGNDEPEGDMPVLLQTLLSRNPKIFRDKSVMQQPMMQQ
YKISQNQVHGSPATNYQQTTVPQSPSGCFTSAQSGSATRFVPQQNSPIPSPYTPQSPADY
MQFNPPSYSQHQQQVAGGVRNSHDNKVSGQLSSNSSNHNARLGSDEEYMNIAHRLGNEQQ
NDPSMRAAAFPVKSPQSVCSPAGNEETAKTGPRPPLIRHSLPPDVPPGAAPDLLLTSADR
KKKQRERGEEENEQMDKNALYDIVSSPSKDSARLTLKLSRVKIPDMDQSGDQLPPRAHMD
SNHETDLMNNNQLSRDAHDLSHRFGAEEQVNCQQVPLRPNTKEIGVSVAGYDDAEIDALA
EIDRIERESAGERERWSKEVQDKDKPLKKRKQDSYPQESGAEASDGPAVQGGNTSSKVTP
KKTSAASNGASRPALMVSIDLQQAGRVIGQPVVVLEARQLCEDHLQHLKSKADTKADKVV
ENKPGINKQHADYPRKSSSDGQPEIPKQKQESRRESKHRHDGKMDSGKGHSDDRRPDTPR
QKHDRHSDTRHKEEKNHNSHRSHVSQPETPKTMSKAERNSKHGEDKGRDREKDKDRDRDR
DKDRDRNRDKERDKDKDRDRDRDRDRDKDKERDRDKDKERDRDRDKERDRDRDKERDRDR
ERDRDKERDRDKERDRDRERKHKTLSRENCNRHSPDRHSKSDSPRVKHDGNKKPTDLNGR
QRTDSSTLQNPQHKKEKKNVGGNIRCQAGNKQQSAETKPSEFPSYLLGGKTGSLKNFVIP
KLKRDGRAKEPQLSGKLIEGWSEPLIRLERVSLVENLNKGAKPVVVLQKLSVDEVKRIIR
ESRNAHSSRPGNWSSFDKSGREMSFGEKANKRRHSMISKKSKYAEVDSDEDDDDDSDNKS
ARKRSKKDHDKTWKHEERKGSGEHRRSQGSGSRHREWGADESDEGTPPPSLSDVARKLKK
KEKQKNRKSYDPKLAPEEKMDSSTFKRFTASVDNILENLEDVDFTAADDDEIPQELLLGK
HQLSELGSDSAKIKAMGIFNKFSSSKLVKILNILEKNIQDSVKLSTLMSHINDSMDEERL
WRDLIMERVTKSADACLTALNIMTSPHMPKAVYIEDVIERVLQYTKFHLQNTLYPQYDPV
YRVDPHGGGVHTSKSKRAKSSTHKQKVVVMLYNKVCDIVSGISELLEIQLLTDTTILQVS
TLGITPFFVESVSELQLCAITLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRL
NSSDSDGEPMHIQMVTALVLQLIQCVVHLPSERDAEDEHNKKVDKDVFITNSYETAMRTA
QNFLSVFLKKCGSKQGEEDYRPLFENFVHDLLSTVNKPEWPAAELLLSLLGRLLVHQFSN
KQTEMALRVASLDYLGTVASRLRKDAVTSKMDQKAIDRILKETPGSDEIQQLQKDLLDYL
DENIETAPSLVFARKFYIAQWYRDTTSEAEKALKCQNENDENLKGRCHSKDVDFTGEIMQ
RAEARKKFLRKVIKTPPLHFSSLRINTIDYEDSCLIVRYLASMRPFAQSFDIYLSQILRV
LGESAIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHCRLMDNSTSVREAAVELLGRFVL
SRPELIEQYYDMLIERILDTGISVRKRVIKILRDICLEQPDFHKITEMCVKMIRRVNDEE
GIKKLVNETFQKLWFTPTPSHDKDAMTRKILNITDVVSACKDSGYDWFEQLLQNLLKSEE
DASYKPAKKACVQLVDNLVEHILKYEESLADCEDKGVNSGRLVACITTLYLFSKIRAQLM
VKHAMTMQPYLTTKCNTQNDFMVICNVAKILELVVPLMEHPSETFLTTIEEDLMKLIIKY
GMTVVQHCVSCLGAIVNKVTHNYKFVWACFNRYYGALAKLKTQHQEDPSSSTLVANKPTL
LRSLFTVGALCRHFDFDQEEFKGTTKIVIKDKVLELLLYFTTHEDEEVQIKAIIGLGFQF
IMHPELMFVQDVKVLYNSILSDESSLVNLKIQVLKNLQTYLQEEDSRMQEADREWKKQAK
QEDLKEMGDISSGMSSSIMQIYLKQVLESFFHSQSTVRHFALSVITLTLSQGLIHPVQCV
PYLIAMGTDPEPTMKNKADQQLVEIDKKYSGFIHMKAVAGLKMSYQVQQAINGAKGAAVR
GFRHDDSDSALCSHLYTMVRGNRQHRRAFLISLLNLFDDSSKTEVNMLLFIADNLACFPY
QTQEEPLFIMHHIDITLSVSGSNLLQSFKESLRKEPVQKEKKMKMKKKKKKKKQSRRKKY
SSDDDNDDEDEEQSRSSSSSSSSSSSSSSSDEDDEVVRRKKKSAVSDSDSDMEDEDAVMD
RLPGNPNPLLDFASASQGILLLLVLKQHLKNLYGFSDSKIQKYSPTESAKVYDKTVNRKA
KVHFNPRQTLDYLKSDLANTELSYETKRNIVKQYLDFKVLMEHLDRDEEDEEGEASANAR
NKAITSLLRGPKLQNHNHNNHSAPVETDEEDSEDDDPPARKPRKGRESAEDSGRMNDTVE
AMDVVAICCPKYKDRPQIARVIQKTKSGYSIHWMTGSYSGPWAVAKKRDGRKKVPWVDNI
KESDIIYKKISLTSGQKLTNKVAHTLRALYAAKEGTKS
NT seq
8037 nt
NT seq
+upstream
nt +downstream
nt
atgaatggtgatatgcttcatgtccccatcactactcttgctggaattgctagcctgaca
gacctgttgaaccagctgcccttgccttctcctctccctgccaccactgctaaaagtctt
ctctacaatggaaggatctctgaagaggtcagcagcctgctggtgtgtccggacgagaat
ctggtgactcagctggcacatagccttaaccaggtctccacagaacacatagagttgaag
gacaacttggggaatgatgaacccgagggtgacatgccagtgcttctacaaactttgctg
tccaggaacccaaagatcttcagggacaaaagtgtaatgcagcagccaatgatgcaacaa
tataagatatctcagaatcaggtgcatgggagtccagcaacaaattatcagcaaaccact
gtccctcaaagtccctctggatgttttacatccgcacagtctgggtcagctactcggttc
gtaccccagcagaacagccctatacctagtccctatactcctcagagtcctgcagattac
atgcagttcaatccacccagttattcccaacaccaacagcaagttgctggtggtgtgaga
aatagccatgacaacaaggtctctggacagctgtcaagtaattcatctaatcataatgca
agactaggctcagatgaagaatatatgaacattgcccacagactgggaaatgagcagcag
aatgacccctccatgagggcggccgcatttccagttaaatcaccacagtctgtgtgttcc
cctgctgggaatgaagagactgcaaaaacagggcccagacctcctcttatcaggcattca
cttccacctgacgtgccaccaggtgcagcacctgacctgctcctcacttccgctgaccgc
aaaaagaagcagagggaaaggggcgaagaggaaaatgaacagatggacaaaaatgccttg
tacgacattgtcagctctccatcaaaagactctgccaggctgactttaaaactgtcccga
gtgaagattccagacatggatcagtctggagatcaacttcctcccagggcacatatggac
tcaaaccacgaaactgatttgatgaataataatcagctgtcaagagatgcccacgacttg
tcacacaggtttggtgctgaggagcaggtaaactgtcagcaggttccccttcggccaaat
accaaggagatcggagtcagtgtggctgggtacgacgacgccgagatagatgctcttgca
gagattgacagaatagaacgcgagtcagctggtgagagagaacgatggtctaaagaagtc
caggataaagacaaaccgctgaagaaacggaagcaagactcgtatcctcaggaatctgga
gccgaggcgagtgatgggcctgccgtacaagggggcaacaccagcagcaaagtgacaccc
aagaagacaagcgccgcaagtaacggtgccagtcggcctgctttgatggtcagtatcgat
ctgcagcaagctggcagagtgataggacagcccgtagtggtattggaagcacggcagttg
tgtgaggaccacctacagcatctgaagtcaaaggctgatacaaaggcagacaaagtggtt
gaaaacaaacctgggatcaataagcagcatgccgactatcccagaaagtccagctcagat
gggcaaccagaaatcccaaaacagaagcaggaaagccggcgggaatccaaacacagacac
gatggcaagatggacagtggcaagggacactcggatgacagacgaccagacacaccacgg
cagaaacacgacaggcattcagacacacgccacaaagaggaaaagaaccacaacagtcac
cggtcccacgtcagccaacccgagactccaaaaaccatgagcaaggccgagcggaactcc
aaacatggagaagacaaaggcagggatagggaaaaggataaggacagagacagagataga
gacaaagatagagatagaaatagagataaagagagagataaagataaagatagagacaga
gacagagacagagatagagataaagataaagagagagacagagataaagataaagaaaga
gacagagacagagataaagagagagacagagatagagataaagagagagacagagataga
gagagagacagagataaagagagagacagagataaagagagagacagggacagagaaaga
aaacacaagacactgtcaagggaaaactgcaatagacactctcccgaccgtcattctaaa
tccgacagcccgagagtgaagcatgacgggaacaaaaaacccactgacctcaatggtcgt
cagaggacagacagttccaccctccaaaacccccaacataaaaaagaaaagaaaaatgta
ggaggtaacattagatgccaagctggaaacaaacagcagtctgctgagacgaaacccagc
gagtttccttcgtacctgttgggtggcaagactgggagtctgaagaactttgtgattcct
aaattgaaacgagacgggagagccaaagagccgcaactttcaggcaagctgatagagggc
tggagtgaaccccttatcagactggagagagtgtcactggtcgagaacttaaacaaagga
gccaaacctgtcgtcgtgcttcagaaactcagcgtcgatgaggtaaagaggatcatcagg
gaaagcaggaatgcacacagctccagaccggggaactggtcctcctttgataaatcaggg
agagagatgtcatttggtgagaaggcaaacaagcgaaggcacagcatgatcagtaagaaa
tccaagtacgcagaggtggactctgatgaagatgatgatgatgactctgacaataagtct
gcgaggaaaaggtccaagaaagaccatgacaagacatggaagcacgaagagaggaaaggt
tctggagagcaccgtcgaagccagggttctggtagccggcatcgtgaatggggcgcggat
gaatctgatgaaggcactccacctccaagcctcagtgatgttgccagaaaattgaagaaa
aaggagaaacagaaaaacaggaagtcatacgatcccaagttggcaccagaggaaaagatg
gactcctccacatttaagagattcacagccagcgtggataacattcttgagaaccttgag
gatgtggacttcactgcggcagatgatgatgagatacctcaagagctcttgcttggaaag
caccagttgagcgaactaggcagtgattctgcgaagattaaagctatgggcatttttaac
aagttttcatctagtaaactggtgaaaatattgaatatccttgagaagaacattcaggac
agcgtcaaactttccacactgatgagtcatattaacgattccatggatgaggaacggttg
tggcgcgaccttatcatggaacgggtgaccaagtctgccgatgcctgtctgactgcactc
aacatcatgacatctccgcacatgcccaaggctgtgtacatagaggatgtgattgagagg
gtgttgcaatacaccaagttccatctgcagaacactttgtatccccagtatgacccggtc
tacagagttgatccccatggaggcggtgtgcatacttcaaagtccaagagagcaaagtct
tccacccacaaacagaaagtggtagttatgctctacaacaaagtgtgcgatatcgtcagc
ggcatctcagagctcctggagatccagctgctaactgacaccacaatcctccaggtgtcc
accctgggtattacaccgttttttgtggagagtgtcagcgaactgcagttatgtgccatc
acactagtgacagcggtcttctctcggtacgagaagcacaggcagctcattctcgaggag
atcttcacctcccttgctagactgcctactagtaaacgcagcctcaggaacttcaggcta
aacagcagtgattcggatggagagcccatgcatatccagatggtcacagccctggttctt
cagctcatccagtgtgtggtacaccttccctctgagagagacgcagaggatgaacataat
aagaaggtggataaagatgtctttatcacaaactcttatgaaactgccatgaggacagct
cagaacttcctgtcagtgtttctcaagaagtgtggcagtaagcagggagaggaggactac
aggcctctgtttgagaactttgttcacgacctcctgtccacggtcaacaagcctgagtgg
cctgcagctgaactcctgctcagtttactgggtcggcttttggtgcatcagttcagtaac
aagcagacagaaatggcactcagggtggcatcactggactacctcggcaccgttgcttct
cgcctgcgcaaagatgccgtcactagcaagatggaccaaaaggctatcgaccgcatcctc
aaagagactccaggcagtgatgagatccagcaactgcagaaggacttactagactacctg
gatgagaacatcgagacagctccatcactagtgtttgccaggaaattttacatcgcccag
tggtacagggacacaacaagtgaggcggagaaagcgctgaagtgtcaaaatgagaatgat
gagaacttgaaaggtcgctgtcattccaaggatgtcgactttaccggagagattatgcag
agagccgaggcacgaaagaaattccttcgcaaggtcatcaagactccaccattgcatttc
agttctctgaggataaacactatagactatgaggactcctgtctgatagtcagatatttg
gcctctatgaggccgtttgcacagagctttgatatttatttatcacagattctgagagta
ttgggtgagagtgcgattgcagtcagaactaaagccatgaagtgtctgtctgaagtagtg
gctgtggatccaagtattctggcacggttggatatgcagcgaggagttcattgtcgcctc
atggacaactccaccagtgtgcgagaggcagctgtggagctgctgggccgtttcgtacta
agtcgacctgagctcattgagcagtactatgacatgctcattgaaaggatattggacaca
ggcatcagtgtaaggaagagagtcattaagatcctgcgggatatttgcctggagcaacca
gacttccacaagatcactgagatgtgtgtcaagatgatccgaagggtcaacgatgaggag
gggatcaagaaattggtgaatgagacgttccagaaactttggttcacccccacacccagc
catgacaaagatgccatgaccagaaagatcctgaacataacagatgtggtgtcggcatgt
aaagattcaggctatgactggtttgagcagctcctccaaaatctgctgaagtcagaggag
gacgcttcttacaaacctgccaagaaggcctgtgttcagctcgtggacaatctcgtggaa
cacattctgaaatatgaggagtcacttgcagactgtgaggacaaaggggtcaactcaggt
cgtctggtagcatgcatcaccactctctacctgttcagcaagatcagagcacagttaatg
gttaaacatgccatgactatgcagccctacctgaccactaagtgcaatactcagaatgac
ttcatggtgatatgcaacgtggccaagatcttggagctggtcgtgcctctgatggagcac
ccaagtgagactttcctcactaccatcgaagaagacctgatgaagctaatcatcaaatac
ggcatgacagttgtacaacactgtgtgagctgtcttggtgctattgtgaacaaggtcaca
cacaactacaagtttgtttgggcttgtttcaatcgttactatggagctctggcaaaactg
aagacacagcaccaagaggaccccagcagctccactctggtggctaacaaacccactctc
ctgcgctcactgttcaccgtgggggctctctgtcgacactttgattttgaccaagaggag
ttcaagggtactaccaagattgtcatcaaggacaaagtgttggagcttctgctgtacttc
accactcatgaagatgaagaggtccagattaaggccatcataggtctaggcttccagttc
atcatgcacccagagctcatgtttgtgcaggatgtgaaggttctgtacaacagtatcctc
tctgatgagagcagcttggtcaatctgaagatccaggtgctaaaaaacctgcagacgtac
ctgcaggaggaggactctcggatgcaggaggctgatcgggaatggaagaagcaagccaag
caggaggatctgaaggaaatgggcgacatctcatcaggcatgagcagctccatcatgcag
atttacctgaagcaggtgctggagtccttcttccactcacagtccactgttcggcacttt
gccctgagtgtcatcacactgactctcagccagggcctcatccatcctgtacagtgtgtg
ccctacttgattgccatgggaacagatcctgagccaaccatgaagaacaaggccgatcaa
cagctggtggagatcgacaagaaatattcagggttcatccacatgaaggcagtcgcgggg
ttgaagatgtcttaccaggttcaacaggccataaatggagccaaaggcgcagcagtccga
ggttttcgtcatgacgactcagactctgctctctgctctcacctctacaccatggtccgt
ggcaaccgacagcacagaagggctttcctcatttccctgctcaacctgtttgacgacagc
tctaaaacagaggtgaacatgctgctgttcatagcagacaacttggcctgcttcccttac
cagacacaagaggagcctctcttcatcatgcaccatatagatatcactctgtctgtctct
ggtagtaaccttcttcagtcattcaaggagtctttacggaaagagcctgtacagaaggag
aagaagatgaagatgaaaaagaagaaaaagaagaagaagcagtctcggaggaagaaatat
agctctgatgacgacaatgacgatgaggatgaagagcagagccgcagcagctctagcagc
agcagcagcagcagcagcagcagcagcagcgacgaggatgatgaggtggtgcgcaggaaa
aagaaatctgcagtttccgattccgactctgacatggaagacgaggacgcggtgatggac
cgtctacctggaaaccccaaccctctgctggactttgccagcgcttcacagggtattttg
ctgctgctggtactcaaacaacatctgaagaatctgtatggcttctccgacagcaaaatc
cagaagtattctcctacggagtctgcaaaagtgtacgacaaaacagtgaacaggaaagct
aaggtgcacttcaacccacgtcaaacactggactacctgaagagtgatctagccaacacg
gagctcagctatgagaccaagaggaacattgtgaaacagtatttggatttcaaggtactg
atggagcacttggatcgtgacgaggaggacgaagaaggcgaagcaagtgccaatgccaga
aacaaagccattacttcacttttgaggggcccaaagctccagaaccacaatcacaataat
cactccgctccggtggagacagatgaggaggacagtgaggatgacgatccacctgcacgg
aaaccaaggaaaggcagggagtccgcagaggattcgggtcgcatgaatgacaccgtggag
gccatggacgtcgttgccatctgctgtcccaaatacaaagacagaccgcagattgccagg
gtcatccagaagaccaaatctggctacagtatacactggatgactgggtcttactctggg
ccctgggctgtggcaaagaaacgggacggtcgcaaaaaggtgccttgggttgacaatatc
aaggagtcagacattatttataagaaaatctccttgacaagcggacaaaagctcacgaac
aaagtggcacacacgttacgggcgctatatgctgccaaggaggggactaagagttaa
DBGET
integrated database retrieval system
