Lates calcarifer (barramundi perch): 108889111
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Entry
108889111 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: ran GTPase-activating protein 1b
KO
K14319
Ran GTPase-activating protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108889111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108889111
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
108889111
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RanGAP1_C
LRR_6
LRR_4
DUF2786
Motif
Other DBs
NCBI-GeneID:
108889111
NCBI-ProteinID:
XP_050922262
UniProt:
A0AAJ8AX03
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Position
LG23:complement(3379428..3385875)
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AA seq
569 aa
AA seq
DB search
MASDDIAQLADALSKTHVGDGELSYKGLGLKLDNAESVEELVREIEQYQGLRALRLEGNT
LGVEAARAIAKALESKDLLQRCYWSDMFTGRLRSEIPTALRSLGSALMSAGTRLTELDLS
DNAFGPDGVKGIEQLLKSPSCHTLRELRLNNCGMGIGGGKILAEALIECHRQSSALGAPL
KLRVFIAGRNRLENEGASALAKAFQLMGSLEEVHCPRTGINYTGVMALAAAMRHNPELRV
LNFNDNTFTKKGTLAMAQALRHLRNIQVVNFGDCLVRSEGAIALAAVLREGLPILKELNL
SFGEITEAAALVVAQAVMDKPYMEKVDLNGNCLGEEGCEALREAMENVDKGDMLASLSDD
EGEPDDEDDDDSEHDDDDVSDDCPEANEEDGEIVKENGKEDSPVKVQSPAEITSFLICPS
VEKLLQLGEMRTNLLQQADASDPHKAADVLLKIASLYSEESETKTAVLETTGDVLKKLLS
GSALQSYCFLSTLLVMMGLLKGEGKMKKVSLVPGQLLCLEHAVQQDYFPQHHASLLHTFV
SKNSEALKSCGAARERLSSALEKRCNDQH
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagatgatattgcacagctggctgatgctctctccaagacccatgtcggggat
ggagagttgagctataagggcctgggactgaagctggacaatgcagagtcagtggaggag
ctggttcgtgagatagagcagtaccagggtctgagagctttgcgcctggaagggaacact
cttggtgttgaggcagcccgagccattgccaaggccttggagagcaaagacctgctccag
agatgctactggagcgacatgtttacgggaagactgcgctctgaaatcccaacagctctg
aggtctctgggcagtgctttaatgagtgctgggaccaggctgactgagttggacctgagt
gacaacgcctttggcccggacggtgtgaagggaatcgagcagctgctgaagagcccctcc
tgccacaccctgagggagctgaggctcaacaactgtggcatgggaatcggaggaggaaag
atcctggctgaagctctgatcgagtgccacagacaatcatcagcccttggagctccgctc
aaactgagggtgttcatcgcagggaggaatcgcctggaaaacgaaggagccagtgccctg
gccaaggcctttcagctgatgggcagcctggaagaagtccactgccccagaactggtatc
aactacactggtgtgatggcgttagctgcagccatgcgacacaacccagagctccgcgtc
ctcaacttcaacgacaacactttcaccaagaagggaacactggccatggcacaggctctg
aggcatctgagaaacatccaggtggtcaactttggagactgtctggtccgctctgaagga
gccatcgccctcgctgcagtgttgagagagggactgccgatcctcaaggagctgaatttg
tcgttcggtgagatcacagaggcggctgcgttagtggtggctcaggccgtcatggacaaa
ccctacatggagaaagtggatctaaacggtaactgtctgggagaagaaggctgtgaggct
ttgagagaggcgatggagaacgtggataaaggagacatgctggcgtcactcagtgacgac
gagggagaacctgatgacgaagatgatgatgacagtgaacatgatgatgatgatgtgagt
gacgactgtcctgaagccaacgaggaggacggagaaattgtgaaggaaaatggaaaagag
gacagtcctgttaaagttcagagcccagcagagatcacgtctttcctcatctgcccctct
gttgaaaagcttcttcagcttggagagatgaggacaaacctgctgcaacaggctgatgcc
tctgacccacacaaggctgctgatgtccttctgaaaattgcttcgttgtacagcgaggaa
tctgagaccaagacagctgttctggagactactggtgacgtgttgaaaaagctcctctca
ggttcagcccttcagtcgtactgcttcctctccacactgctggtcatgatgggactccta
aagggagaggggaagatgaagaaggtgtcgctggtcccaggtcagctgttgtgtttggag
cacgctgtccagcaggattacttcccccagcaccacgcctcgctgcttcacaccttcgtg
tccaagaacagtgaagctctcaagtcctgcggagccgccagagagaggctgagctctgct
ctggagaagaggtgcaacgaccaacactga
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