Lates calcarifer (barramundi perch): 108889125
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Entry
108889125 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6B protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108889125
03036 Chromosome and associated proteins [BR:
lcf03036
]
108889125
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108889125
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108889125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
108889125
NCBI-ProteinID:
XP_018540983
UniProt:
A0AAJ7PX98
LinkDB
All DBs
Position
LG23:3529458..3546982
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AA seq
2144 aa
AA seq
DB search
MEDKKRKKDEKRKREASQKVTEQKNKVPDLTKPASTQSPATQSSSASPSPGPTPSASPSP
ATSGPGSAATPSQGGNNAKRLAVANGQPTSTTSSSSTAGGPSAAGNGSTSSGGGAQAPQQ
QPRYMPREVPPRFRCQQDHKVLLKRGQPPLSSMLLGGGGGGDGPNANMAAVSDSGAAASS
LALTSSSVAASTTTSNYANSMWGASSGSQTSSQGREKVIVDGNDLEEWPSIAGSDGGGAS
FTRAGGGSSNNGMPVNSISASGNQSSPTSSFSLPNECMQSSNGVAWGTAASQGHLGGGNA
VAAAGPLLQQPSSLSKASAVPGSHDASGPVDGSSGIPGANFNPNANPSAWPALVQQDGPA
AAGEGGQSSFHHQGPGGSLSANNSASLGLGGGAVGVLGGHPPLSVNQSSTHQHQLHQMQS
RDREMGVGKWDSESAGPKIAGGEGIGGGMDRGVGGGGMSVGDHSLASSWRGQPSYPAANS
KTGASRTDGWEGGGGGTGGFGAAEGDNGTSGWGYPSSTSGVNAWGSAETGGNSSQTSGVS
QGGWGSSGVGGERGVSGSDWGGSSSGIGGANPGGEGMGGACSSNSSSSGGSTAGNPPATS
SSSSTATTLTRAWDNQKGEGETGEWGGGGGGQGARGGSSSSGGNSRSGSGPNSSHSRPRR
PAPNAETALQNLLSRSDLDPRVLSNTGWGQTQIRQNTAWDVEEQGGHSKGGSSSATSKHP
SSLCGSSQYSGGPRTLISDSMGPGLNPSLVQSAGSSGEGWESSSNSSSSGASLSGRAPPP
SGSNMRNLGVSQSGPATTAGPGMGPGVIPGHNQQGKATGWGGEVMGAGDSQEAKGWGSEE
WRDSGRGGTGGGWGDLGQQGDPVSGGWGGSQEEKAAGGWKEMGGNGGGSGWGSGQVGAGR
DWGEQESKSNSGGGGWEDERKKSGNSGGDSGVGGWGSWDDSAPRRTWGAGGTGGGGSGGG
GMGVVGATGSKTHQTWSGGNKMHQMPNSQLGSITGPQAQLQQQQSQPRNQHPQLQQALDQ
GAMQGGGGRKPISQAQNQNQSSGWASGPIPGGGGSGGGSEPSGWEEPSPQSISRKNEIDD
GTSAWGDPTHYNYKPVNLWDKNSTPAGQQPHVQGQAQQQQQQQQQQQQQQQQQQQQQQGP
PIQQQPSRQTAGLGGNRDFNSGHGPGKTSAMGPSGWGGTSPTSPTVDNGTAAWGKPSDAP
TGWGDPDSAGGKTTGWGNPSPNPIKSGSKSMQDGWGDKEGSVAASRHSSWEDEEEGGGMW
NSTGSQGSSSSWGQGSNGGAWGQSHTGKKPSNKGPLKAGGGDSWMNPINRQFSNMGLLND
DPSGRDLDLAPGSLQEKKMEAEKRSMGINDYNGDMRKGGRVGGGGGMAYRPPGSKEAAPG
DAGSYYDKTLPLTNQDGCPGEEGPCSLYSPPTVYKPHSLFNHTIPFRQGGHSIFGSGGGM
AQSRHQPSVAPINQSPGIRAQVPHQFLSPQVPGSVLKQMPPPSGSVGGVGGVGGVAGVGG
GVFPPQLSPQHIAMLSSIYPPHIQFQLACQLLLQQQQQPQQQQQQLLQNQRKFTPNVRQQ
TDPQQLARIMAVLQQQRQQQQVGGLGGSSKLSPSHHGGGLGGPRLPVADPLPHPGLAGSV
ADLHQKTLGPYSGFGSGVNLPGLDLGGSVVGGPGGMKDLGGQQSRFKWMMEGHSSPDTSL
PENAFHKNGPVTPIKMPGGSPYSQYDMMVGDGLSDNWHRTPGKMVTKPAATPSWPPEFQP
GVPWKGIDRVDPESDPYMTPGSMMGNTVSPNLNDTEHQLLQDNTDSTPPLNTLLPSPGAW
PYSASDSPLNNAHNSAKYTDYKTSWPPEPIGHKSWKASRGSSQSQLSRPPPGLASQKQPS
PSPWSGGAPRLAGRGWGGGSSTTGSTWSDGSSRESCWLVLSNLTPQIDGSTLRTICMQHG
PLLTFHLGLTQGTALIRYGSKQEAAKAQSALHMCVLGNTTILAEFVSEEDVARYIAHSQA
GGAGSGGTTAGSAGSGPTAASAVGANSNGGSCERGGAGGSSSGGGGGGVEGGSTAGGAGT
GGAGPSSSGWQSLDSTGSSSDQSATQGPGLGIFAQWSSNGTGVGGAVGVEAGRQGLWGGM
GGMSGAGYPSSSLWGSPALEDRHQMGSPASLLPGDLLGGGADSI
NT seq
6435 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaggaaaaaagacgaaaaaaggaaaagggaagcctctcagaaggtt
acagaacaaaaaaacaaagtgccagacttgaccaagccggcgtctacccagtctcctgcc
actcagagcagctctgcctcccccagccctggacccaccccctctgcctccccatcccca
gccacctcgggccctggcagtgctgccaccccgtcacagggcggcaacaatgccaagcgc
ctggcggtggccaacggacagcccacctccaccaccagttcttcctccaccgctggcggc
cccagtgctgctgggaacggcagcacaagtagcggaggcggagcccaggcgcctcagcag
caaccgcgctacatgccgagagaagtgccgccgcgattccgctgccagcaggaccataaa
gtgctactgaagaggggtcagccgccactgtcctccatgctgctgggagggggaggagga
ggggatggcccaaatgcaaacatggctgctgtctcagattctggtgcggctgcctcctca
ttggccctcacctcatcatcagttgctgcttctactactacttctaattatgcaaattcc
atgtggggggcgagctcaggcagccagacctcctctcagggcagggagaaggtgattgtc
gatggcaacgacctggaggagtggcctagcatcgctggcagtgatgggggaggagcgtct
ttcaccagggctggagggggcagcagcaacaatggaatgcctgtgaacagcatcagtgcc
tctggcaaccaatcctcacccacttcctcgttctctttgcccaatgaatgtatgcagtcg
tccaatggcgtggcatgggggacggctgcctcccagggtcatcttggaggagggaatgca
gtagctgcagctgggcctctgctacaacagccctcctcactttccaaagcctccgctgtg
ccagggagccatgatgccagtggccccgtcgacggcagcagtgggattccaggtgccaac
ttcaatccaaatgccaacccttcggcctggcctgccctggtgcagcaggatgggcccgct
gctgcaggggaaggaggtcagtcttccttccatcaccagggccctggagggtctttgtct
gccaacaactctgcttccctggggctgggaggcggggcagtcggggtgctggggggtcac
ccacctttatctgtgaatcaatcaagcacccatcagcaccaacttcaccaaatgcaatcc
agagacagagagatgggagtggggaagtgggacagcgaatcagcgggaccaaaaatcgca
gggggggaagggatagggggaggaatggaccgtggtgttggaggcggcgggatgagtgtg
ggagaccacagccttgcctcctcatggagaggccagccttcttaccctgcagctaactcc
aaaacgggtgcctcaaggactgatggatgggagggcggaggaggcggcacaggtggattc
ggagctgctgaaggggataatgggacctcgggttgggggtatccaagttccactagtggg
gttaatgcttggggcagtgctgaaactgggggaaacagtagtcaaacctctggggtatct
cagggagggtgggggtcatcaggagtaggaggggagagaggagtttctggtagtgattgg
ggtgggagctcctctggtattggaggagctaatccaggaggagagggaatgggtggagcc
tgcagcagtaacagcagcagtagtgggggcagcacagctggcaaccccccggccacctcc
tcgtcttcctcgacagccaccactttgaccagagcttgggacaatcagaagggagagggt
gaaactggggaatggggtggaggaggaggaggacagggggcccggggaggatcttcatcc
agtggcggaaattccagaagcgggagcggacctaacagcagtcacagtcgtcctcgccgc
ccggcaccaaacgctgaaactgccttacagaacctgctaagccggtctgatctggaccca
cgggtcctgtccaacacaggctggggccaaacacagatccgacaaaacacagcctgggat
gttgaagaacaaggaggacacagcaaaggtggatcatcatcagctacatcaaaacaccca
tcttctctctgtggttcttctcaatattctggtggacccaggaccctaatcagtgattca
atgggaccagggctcaatccctccctggttcagtctgctgggtcctctggagagggctgg
gagagcagcagcaacagtagcagtagtggagcctctctgtctgggagagctccaccacct
tcaggctccaacatgaggaatcttggcgtctcacaatctgggccagcgaccacagcggga
ccgggtatggggcctggggtaataccaggacataaccagcaggggaaggctacaggctgg
ggtggagaagtgatgggggctggggacagccaggaggccaagggttggggtagtgaggaa
tggagggacagtggtagaggaggaactggaggaggatggggtgatcttgggcaacagggt
gacccagtgagtggaggctggggaggaagtcaggaggagaaagcagcagggggttggaaa
gaaatgggtgggaatggaggaggaagtgggtggggatcgggacaagttggggcaggtagg
gactggggagagcaagagtccaaatcaaatagcgggggagggggatgggaggatgagagg
aagaaaagtggaaactcaggtggggattcaggtgtgggcggttggggaagctgggatgac
agtgctccccggaggacctggggagcagggggcacagggggaggagggagcggaggaggc
gggatgggtgtcgtgggggcaacgggttcaaaaacccatcaaacctggagtggaggaaac
aaaatgcaccagatgccaaacagccagttgggctccatcacaggcccacaggcacaactg
caacagcaacaatcacagccccgcaatcagcatccacagctgcagcaagcattggaccaa
ggggctatgcaagggggcggggggaggaaacccatctctcaagcccagaatcagaaccaa
agctcaggctgggcctcgggacccatccctggcggcggaggaagtggaggcggatctgaa
ccgagcggttgggaggaaccctcgccgcagtctattagtaggaaaaacgagatcgatgat
ggaacatcggcttggggcgacccgacgcattacaactacaagccggtcaacttgtgggat
aagaacagcacccctgctggccagcagccgcatgttcagggtcaggcccagcaacagcaa
cagcagcagcagcagcaacaacaacaacagcagcagcagcaacagcagcagcagggacct
ccaatacagcaacagcctagcaggcagactgcaggactcggaggaaacagagacttcaac
agtggccatggacctgggaaaacttcagctatgggtccgtcaggttggggtggtacttct
ccaactagtcctacagtggacaatggcacagcagcttgggggaaacctagtgatgcccct
acaggctggggagaccctgacagtgctggagggaagacaacaggctggggaaacccttct
cccaaccccatcaaatctggttcaaagtctatgcaagatggctggggggacaaagagggc
tctgtggcagcctcgcgtcactcgagctgggaggatgaggaggagggaggcggcatgtgg
aacagcaccggctcccagggaagcagctcgtcgtggggacagggaagcaacggcggcgcc
tggggacagagccacaccgggaagaagcccagcaacaagggtccactgaaggctggtgga
ggagactcatggatgaatcccatcaacagacagttttcaaacatggggctgctgaacgat
gatcccagtggccgagacctcgatctggcgccgggttctctccaggagaagaagatggag
gcggagaaaagaagcatgggaattaacgattacaatggagacatgaggaagggcggaaga
gtaggaggaggaggggggatggcttatcgtccacctggttccaaagaggcagcacctggg
gatgctggatcctactacgacaagaccttgcctttgaccaatcaagatgggtgccctggg
gaggagggtccttgctctctgtactcaccacccactgtctacaagccccattccctcttc
aaccacactatcccttttagacaaggcggtcacagtatctttggcagcggtggagggatg
gctcagtcaagacaccagccaagtgtcgcacccataaaccagtccccagggatacgagcg
caagtgcctcatcagttcctgtcacctcaggtgccaggctctgtgctgaagcagatgccc
cctcccagcgggagcgtggggggtgttggcggcgtgggaggagtggcaggagtcggggga
ggtgtgttccctccacagctgtccccccagcatattgccatgctcagcagcatctaccca
cctcacattcagtttcaactggcttgtcagctcctcctccagcagcagcagcagccacaa
cagcagcaacagcagctgctgcaaaaccagaggaaattcacgccgaacgtgcggcagcag
actgaccctcaacagttggccaggatcatggcagtgctccagcagcagaggcagcagcag
caggttgggggtttaggcggcagctccaaactctccccctcccaccatggaggtgggtta
gggggtcccagactgcctgtggctgaccccctgccccatccaggtctggcagggtctgtg
gctgacctgcaccaaaaaactcttggaccgtactctggttttggttctggggtgaactta
ccaggtctggaccttggtggttctgtggtgggtgggcctggtggcatgaaggacctaggg
ggtcagcagtcccgcttcaaatggatgatggagggccactcttctccagacacatcctta
cctgaaaacgcattccataaaaatggtcccgtcacccccataaagatgccggggggctcg
ccctactctcagtacgacatgatggttggagacgggctgagtgacaactggcatcgcacc
cctggcaagatggttaccaagcctgctgccacgcccagctggcccccagagttccagcct
ggcgtgccctggaagggaattgaccgcgtcgaccctgaatccgacccctacatgaccccg
gggagcatgatgggaaacacggtgtcccccaacctcaatgatactgagcaccagttgtta
caagacaatacagattccacccctcccctcaacaccttgctgccttcacctggtgcctgg
ccctacagtgcctcagacagtcccctcaacaacgcacacaactcagcaaagtacacagac
tacaagaccagctggcccccagagcccattggacacaaatcctggaaagccagccgtggc
agcagccagtcccagctgtcccgcccacctccaggactagccagtcagaagcagccatca
ccttccccctggtcaggaggagcccctagactggccggcaggggctggggcggtggctcc
agcaccactggctcgacctggagtgacggcagctctcgggaaagctgctggttggtgctc
agcaacctcacaccacagattgatggctctacactgaggaccatctgcatgcagcacggc
cccctgctgacctttcaccttggcctgacccaaggaacagccctgattcgctacggatcc
aaacaggaggcagccaaggcccagagcgcactgcacatgtgtgttctgggtaacaccacc
atcttggcggagtttgtgagtgaagaggatgtggctcgctacattgcacattcccaggcc
ggaggagcaggtagcggaggaaccacagccggatctgcaggctccgggcctacggcggcc
tccgcggtgggggctaacagtaatggaggaagctgtgagagaggtggagcaggaggcagc
agcagtggaggaggaggaggaggagtagaaggaggatccacagctggtggagcaggaacc
ggaggagccgggccttccagctccgggtggcagagtctggacagcacaggcagctcatcg
gaccagtccgccacccaggggcccgggctgggcatcttcgcccagtggagcagcaacggg
accggggtgggcggggctgtaggcgtggaggccggaaggcagggcctatgggggggaatg
ggtgggatgagcggggcgggttaccctagcagtagcctctggggttccccggcgctggag
gatcgtcaccagatgggcagccccgcctcgctgctgccaggggacctgctgggcgggggg
gccgactccatctaa
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