Lates calcarifer (barramundi perch): 108889272
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Entry
108889272 CDS
T04895
Name
(RefSeq) lumican
KO
K08122
lumican
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lcf00535
]
108889272
Proteoglycans [BR:
lcf00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class II
108889272
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Motif
Pfam:
LRR_8
LRR_4
LRRNT
LRR_9
LRR_14
LRR_LRWD1
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
108889272
NCBI-ProteinID:
XP_018541159
UniProt:
A0A4W6E3V7
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Position
LG18:8184944..8189344
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AA seq
342 aa
AA seq
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MSPLRVPLLAVLVSMALCQYYDYDYQPVSVLGPSGPNCNQECDCPVNFPTAMYCDNRKLK
FVPVVPTGIKYLYLQNNMIEEIKAGVFDNVTADLRWLVLDNNQLTNAKIAKGTIDKLSGL
EKLYFSYNNLTEPIIPPSKSLDELKMTHNKLSKFPSGLLTDKENLTSINLQHNQLTSESI
TGAFKGSKKLLSLDVSHNKLKKLPAGVPSSLEILYADYNDIDSIGAGYLNKLPSLQYLRI
SHNKLVDSGIPAGVFNVTSLVELDLSFNKLQSIPEINEQLEQLYLQANEINKIDMSSFCK
FIGPINFSRLKHLRLDANNVTYSNMPHDSANCLRQASDIMFE
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctctgcgtgtacccctgttggccgtactggtcagtatggccctgtgccagtac
tatgactacgactaccagcctgtttccgtactaggaccctcagggcccaactgtaatcaa
gaatgcgattgcccagtcaactttcccactgccatgtattgtgacaaccgcaagctcaag
tttgttcctgtagtcccaacagggatcaagtacctgtacctccagaacaacatgattgaa
gagatcaaggctggggtgtttgataatgttactgctgaccttcgctggcttgtacttgac
aacaaccagctcaccaatgctaagatagcaaagggaacaattgacaaactcagtggcctg
gagaagctatacttcagctataacaacctcacagagccaatcatccctccctcaaagtcc
cttgatgagctgaagatgacgcacaacaagttgtccaagttcccctccggactcttgact
gacaaagaaaatttgacttccatcaaccttcagcacaatcagctaacctctgaatccatc
acgggggcattcaaagggtcaaagaagctgctgtccctggatgtgagccacaacaagctg
aagaagctgccagccggtgtccccagttcactggaaatcctctatgctgactacaacgac
attgacagtattggagccggatacctgaacaagctgccctcgctgcagtacctaaggatc
tcccacaacaagctggtagactctgggatccctgctggagtgttcaatgtgacatcactg
gtggagctggacctgtctttcaacaagctgcagtctatcccagagatcaatgagcagctg
gagcaactctacctccaggcaaatgagatcaacaagattgacatgtcaagtttctgcaag
ttcattggacccatcaacttttcccgtctgaagcatctgcgtctggacgccaacaacgtc
acatacagtaacatgccccatgactccgccaactgcctgcgccaagcttcagatatcatg
tttgaataa
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