Lates calcarifer (barramundi perch): 108889333
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Entry
108889333 CDS
T04895
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03440
Homologous recombination
lcf04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108889333
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
108889333
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108889333
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108889333
03036 Chromosome and associated proteins [BR:
lcf03036
]
108889333
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108889333
Peptidases and inhibitors [BR:
lcf01002
]
Metallo peptidases
Family M67
108889333
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
108889333
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
108889333
BRISC complex
108889333
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
108889333
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
108889333
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
108889333
NCBI-ProteinID:
XP_018541242
UniProt:
A0A4W6E7X6
LinkDB
All DBs
Position
Unknown
AA seq
260 aa
AA seq
DB search
MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVEITRIVHIHSVIILRRSDKRKDRV
EISPEQLSAASTEAERLADMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMLDQCFV
GLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSEYERVEIPIHVVPREAIGKVCLESAVEL
PRILCQEEQDTYRKIHSLAHLDPVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNK
QSIVELQQEKERLLQELAAL
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgagcgccgttcacctggagtcagacgccttcctggtgtgcatgaatcacgcc
ctgagcacagagaaggaggaggtgatgggtttgtgcatcggagaggtggaaatcacccgg
atcgtccacatccactccgtcatcatcctccgccgctcggacaagaggaaggaccgggtg
gagatctccccggagcagctgtcagcggcctccacggaggcggagaggctggcggacatg
acgggcaggccgatgcgggtggtgggctggtaccactcccacccgcacatcaccgtgtgg
ccgtcccacgtagacgtgcggacccaggccatgtaccagatgctggatcagtgcttcgtg
ggcctcatcttctcctgcttcatcgaggataagaacaccaagacgggccgggtgctgtac
acctgcttccagtccgtgcaggcgcagaagggctccgagtacgagcgggtggagatcccc
atccacgtcgtgccccgcgaagccatcggcaaggtgtgcctggagtcggccgtggagctg
ccgcggatcctgtgccaggaggagcaggacacgtaccgcaagatccacagcctggcgcac
ctggaccccgtcaccaagatccacaacggctcggtgttcaccaagaacctgtgcagccag
atgtcggcggtgagcgggccgctgctgcagtggctggaggaccggctggagcagaacaag
cagagcatcgtggagctgcagcaggagaaggagaggctgctgcaggagctggctgctctg
tga
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