Lates calcarifer (barramundi perch): 108889380
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Entry
108889380 CDS
T04895
Name
(RefSeq) green-sensitive opsin
KO
K04250
rhodopsin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
108889380
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
lcf04030
]
108889380
G protein-coupled receptors [BR:
lcf04030
]
Rhodopsin family
Vision
Opsin
108889380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
7tm_1
Rhodopsin_N
7TM_GPCR_Srw
7TM_GPCR_Srsx
7TM_GPCR_Srv
Motif
Other DBs
NCBI-GeneID:
108889380
NCBI-ProteinID:
XP_018541321
UniProt:
A0AAJ7PXM4
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All DBs
Position
LG12:24152781..24156229
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AA seq
345 aa
AA seq
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MENGTEGKNFYIPMNNRTGLVRSPFYYPQYYLGDPWQFKILAVYMFFLICTGFPINALTL
VVTAQNKKLRQPLNFILVNLAVAGLIMVCFGFTITFVTALNGYFIFGPMGCAIEGFMATL
GGQVALWSLVVLAVERYIVVCKPMGSFKFTATHAGVGVLFTWIMALACAAPPLAGWSRYI
PEGLQCSCGPDYYTLAPGYNNESYVMYMFICHFCFPVGTIFFTYGSLVLTVKAAASQQQD
SASTQKAEKEVTRMCVLMVLGFLVAWTPYASFAAWIFFNKGAAFTATAMAIPAFFSKSSA
LFNPIIYVLMNKQFRNCMLSTVGMGGMVDDETSVSTSKTEVSSVS
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggagaacggcacagagggcaagaacttctacatccccatgaacaacaggacggggctt
gtgaggagtcctttttattatccacagtactatctgggggatccatggcaattcaaaatt
cttgctgtctacatgttcttcctgatctgcactggcttccccatcaacgctctgactctg
gtggtcactgctcagaacaagaaactccggcaacctctcaacttcatcctggtcaacctg
gctgtggccggactcatcatggtctgctttggtttcaccatcaccttcgtaacagctctt
aacggctatttcatttttggaccaatgggttgtgccattgaagggttcatggctacttta
ggaggtcaagtcgctctctggtccctggtcgtcttggctgttgagagatacattgttgtc
tgcaaacccatgggaagcttcaaattcactgcaactcatgcaggagttggagttcttttc
acctggatcatggctctcgcttgtgctgcccctccgcttgctggctggtctaggtacatt
cctgagggtctacagtgctcttgtggaccagactactacactctggccccaggttacaac
aacgaatcatatgtcatgtacatgttcatctgccacttctgtttccctgttggcaccatc
tttttcacttatggaagccttgtgctgacagtcaaagctgctgcatcccagcagcaggac
tctgcatccacccagaaagctgagaaggaagtgacacgcatgtgcgtcttgatggtgctg
ggcttccttgtggcctggaccccatatgctagctttgctgcatggatcttcttcaacaag
ggagctgccttcacagctacagccatggccatccctgccttcttctcaaagagctcagcg
ttgttcaatcctattatctatgtgctaatgaacaaacagttccgtaactgcatgctgagc
actgttggaatgggtggtatggtggatgatgagacctcagtatcaaccagcaagacagaa
gtgtcctctgtctcttaa
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integrated database retrieval system