Entry |
|
Name |
(RefSeq) green-sensitive opsin
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KO |
|
Organism |
lcf Lates calcarifer (barramundi perch)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:lcf00001]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
108889380
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:lcf04030]
108889380
G protein-coupled receptors [BR:lcf04030]
Rhodopsin family
Vision
Opsin
108889380
|
SSDB |
|
Motif |
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Other DBs |
|
LinkDB |
|
Position |
LG12:24152781..24156229
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AA seq |
345 aa
MENGTEGKNFYIPMNNRTGLVRSPFYYPQYYLGDPWQFKILAVYMFFLICTGFPINALTL
VVTAQNKKLRQPLNFILVNLAVAGLIMVCFGFTITFVTALNGYFIFGPMGCAIEGFMATL
GGQVALWSLVVLAVERYIVVCKPMGSFKFTATHAGVGVLFTWIMALACAAPPLAGWSRYI
PEGLQCSCGPDYYTLAPGYNNESYVMYMFICHFCFPVGTIFFTYGSLVLTVKAAASQQQD
SASTQKAEKEVTRMCVLMVLGFLVAWTPYASFAAWIFFNKGAAFTATAMAIPAFFSKSSA
LFNPIIYVLMNKQFRNCMLSTVGMGGMVDDETSVSTSKTEVSSVS |
NT seq |
1038 nt +upstreamnt +downstreamnt
atggagaacggcacagagggcaagaacttctacatccccatgaacaacaggacggggctt
gtgaggagtcctttttattatccacagtactatctgggggatccatggcaattcaaaatt
cttgctgtctacatgttcttcctgatctgcactggcttccccatcaacgctctgactctg
gtggtcactgctcagaacaagaaactccggcaacctctcaacttcatcctggtcaacctg
gctgtggccggactcatcatggtctgctttggtttcaccatcaccttcgtaacagctctt
aacggctatttcatttttggaccaatgggttgtgccattgaagggttcatggctacttta
ggaggtcaagtcgctctctggtccctggtcgtcttggctgttgagagatacattgttgtc
tgcaaacccatgggaagcttcaaattcactgcaactcatgcaggagttggagttcttttc
acctggatcatggctctcgcttgtgctgcccctccgcttgctggctggtctaggtacatt
cctgagggtctacagtgctcttgtggaccagactactacactctggccccaggttacaac
aacgaatcatatgtcatgtacatgttcatctgccacttctgtttccctgttggcaccatc
tttttcacttatggaagccttgtgctgacagtcaaagctgctgcatcccagcagcaggac
tctgcatccacccagaaagctgagaaggaagtgacacgcatgtgcgtcttgatggtgctg
ggcttccttgtggcctggaccccatatgctagctttgctgcatggatcttcttcaacaag
ggagctgccttcacagctacagccatggccatccctgccttcttctcaaagagctcagcg
ttgttcaatcctattatctatgtgctaatgaacaaacagttccgtaactgcatgctgagc
actgttggaatgggtggtatggtggatgatgagacctcagtatcaaccagcaagacagaa
gtgtcctctgtctcttaa |