KEGG   Lates calcarifer (barramundi perch): 108889380
Entry
108889380         CDS       T04895                                 
Name
(RefSeq) green-sensitive opsin
  KO
K04250  rhodopsin
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04744  Phototransduction
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09150 Organismal Systems
  09157 Sensory system
   04744 Phototransduction
    108889380
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04030 G protein-coupled receptors [BR:lcf04030]
    108889380
G protein-coupled receptors [BR:lcf04030]
 Rhodopsin family
  Vision
   Opsin
    108889380
SSDB
Motif
Pfam: 7tm_1 Rhodopsin_N 7TM_GPCR_Srw 7TM_GPCR_Srsx 7TM_GPCR_Srv
Other DBs
NCBI-GeneID: 108889380
NCBI-ProteinID: XP_018541321
UniProt: A0AAJ7PXM4
LinkDB
Position
LG12:24152781..24156229
AA seq 345 aa
MENGTEGKNFYIPMNNRTGLVRSPFYYPQYYLGDPWQFKILAVYMFFLICTGFPINALTL
VVTAQNKKLRQPLNFILVNLAVAGLIMVCFGFTITFVTALNGYFIFGPMGCAIEGFMATL
GGQVALWSLVVLAVERYIVVCKPMGSFKFTATHAGVGVLFTWIMALACAAPPLAGWSRYI
PEGLQCSCGPDYYTLAPGYNNESYVMYMFICHFCFPVGTIFFTYGSLVLTVKAAASQQQD
SASTQKAEKEVTRMCVLMVLGFLVAWTPYASFAAWIFFNKGAAFTATAMAIPAFFSKSSA
LFNPIIYVLMNKQFRNCMLSTVGMGGMVDDETSVSTSKTEVSSVS
NT seq 1038 nt   +upstreamnt  +downstreamnt
atggagaacggcacagagggcaagaacttctacatccccatgaacaacaggacggggctt
gtgaggagtcctttttattatccacagtactatctgggggatccatggcaattcaaaatt
cttgctgtctacatgttcttcctgatctgcactggcttccccatcaacgctctgactctg
gtggtcactgctcagaacaagaaactccggcaacctctcaacttcatcctggtcaacctg
gctgtggccggactcatcatggtctgctttggtttcaccatcaccttcgtaacagctctt
aacggctatttcatttttggaccaatgggttgtgccattgaagggttcatggctacttta
ggaggtcaagtcgctctctggtccctggtcgtcttggctgttgagagatacattgttgtc
tgcaaacccatgggaagcttcaaattcactgcaactcatgcaggagttggagttcttttc
acctggatcatggctctcgcttgtgctgcccctccgcttgctggctggtctaggtacatt
cctgagggtctacagtgctcttgtggaccagactactacactctggccccaggttacaac
aacgaatcatatgtcatgtacatgttcatctgccacttctgtttccctgttggcaccatc
tttttcacttatggaagccttgtgctgacagtcaaagctgctgcatcccagcagcaggac
tctgcatccacccagaaagctgagaaggaagtgacacgcatgtgcgtcttgatggtgctg
ggcttccttgtggcctggaccccatatgctagctttgctgcatggatcttcttcaacaag
ggagctgccttcacagctacagccatggccatccctgccttcttctcaaagagctcagcg
ttgttcaatcctattatctatgtgctaatgaacaaacagttccgtaactgcatgctgagc
actgttggaatgggtggtatggtggatgatgagacctcagtatcaaccagcaagacagaa
gtgtcctctgtctcttaa

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