Lates calcarifer (barramundi perch): 108889404
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Entry
108889404 CDS
T04895
Name
(RefSeq) sortilin
KO
K12388
sortilin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
108889404
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Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
BNR_6
Motif
Other DBs
NCBI-GeneID:
108889404
NCBI-ProteinID:
XP_018541346
UniProt:
A0AAJ7V8Y2
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Position
LG12:19444442..19461299
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AA seq
834 aa
AA seq
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MWSQLLGQMSFSQSPKFGSLPVNMISASCILALGLLSCAVLGRDLQGGEKLPGLKRLQRQ
SGGDEEPHSLERSDLSKRSTGLNGQTCTALPGVESALQDNTHTFTFKVRTMGSLSLAWVG
DGSGVLLVLTTFQVPLFMMRFGQSNLYRSEDYGKTFKDVTYLINHTFIQTEFGIAISPDH
SGKVILTGDVSEMGGFRLFRSQDFGLTFVPTDLPFEPLIQMLYNPGDCNALMTLSITLDL
WLSEDFGTTWRKIHDSVCLVRWGPKNSIYFTTNYNGSCNDKGMLELRKTADYGRSFQTIA
RRVYSFVLGGKFVFASIMTGRGTERMIHVSVDGGEVWNMAQLPKVNHEQFYSILAANQDM
IFMHVDDPGDSGFGTIYVSDDRGTVFSKSLERHLYTTTGSDTDFTAITSLRGVYMTSALT
EDGAVETVITFDQGARWQTLRRPQNSHCDTETSTNRPNRCRFHIHASYSTTMKMNVPMLP
LSQPNAVGLILAHGSVGDAESALSPDVYVSDDGGYSWLFALRGPHHYAILDSGGLLVAVE
HTNSPVNQIKFSTDEGQCWHMYNFTNDPIHFSGMDSEPGSRSMNVSLWGYRNDLSKWVVI
TIDFKKLLTRDCTEGDYVQWLAHSADPSGSNDGCVLGYKETFLRLRRDSVCWNGRDYGVT
KKLSPCPCTMDDYHCDFGYYRPENSSECEEQEEMKGSPLEFCLNGTTEQLQTSGYRKIPG
DQCEGGFQPERKETDLGRMCTSNALYPNSLTETSSLNAAVIVMVVIALLLTSAVAGVWLV
KKYVCGGRFLVHRYSVMREHVEANKIEGVDDIDPHYMETGKAQYNEDSDQDLLE
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgtggagccaactgctgggacagatgagtttctcgcagagtccaaagtttgggagtctt
cctgtaaacatgatctccgcatcttgcattttggcgctcggcttgttgtcgtgtgctgtg
ctgggcagagatctccaaggtggagaaaagctgccaggtttgaagaggctgcagaggcag
tctggcggggatgaagagccacatagtttagagaggtccgacctctcgaaacgtagcaca
ggactgaatggacagacatgtacggctctgcctggagtagagtcagccctgcaagacaac
acccatacgttcaccttcaaagtgagaaccatgggttcactgtcactggcctgggtggga
gatggatcaggggtgctgctggttttgacaacatttcaggtgccgttgttcatgatgcgc
ttcggtcagtcaaacctttacaggagtgaagactacgggaagaccttcaaagatgtgact
tacctgatcaaccacaccttcatccagactgagttcggtatcgccatcagtcctgaccac
tctgggaaggtgatcctgacaggtgatgtgtcagagatgggggggtttcgactgtttcgc
tcacaagactttggcctcaccttcgttccaactgatctaccgtttgagcccctcattcag
atgctgtacaaccctggagactgcaacgcacttatgacgctcagcatcacgttggatctg
tggctgtctgaggactttggcaccacctggaggaagatccatgacagtgtgtgtttggtc
agatggggtccaaagaacagcatctatttcacaacaaactacaatggatcatgcaatgat
aaaggaatgctagagttaaggaagacagcagactatggtcgaagtttccagaccattgca
agaagagtttactccttcgtgctgggggggaaatttgtctttgcttccatcatgaccggc
aggggtacagagcgtatgatccacgtgtcagtggacggaggtgaggtgtggaacatggct
cagcttccaaaagtcaaccacgagcagttttactccatcctggcagccaatcaggacatg
atcttcatgcacgtggatgaccctggcgactctggctttggaaccatctatgtctcagat
gacagaggaaccgtgttctctaagtctctggagcgccatctgtacacaaccacgggaagt
gacactgatttcactgccattacttcactcaggggcgtctacatgacaagtgcactgaca
gaggatggggcagtggagacagtgatcacttttgaccaaggagcaaggtggcagacgctg
cgcagaccacaaaacagccactgtgataccgagacctctactaacaggccaaacagatgc
agatttcacatccacgcctcctatagcaccaccatgaagatgaatgtccctatgctgccg
ctctcacagcccaacgcagtgggcctcattctggcccatggcagtgttggagatgcagag
tcagctctctcccctgatgtctacgtgtccgatgacggtggctactcgtggctgtttgcc
ctcaggggccctcatcactatgctatcctggattctggaggcctgctggttgctgtggag
cacaccaactcacctgtcaaccagatcaagttttcaacagatgaggggcagtgctggcat
atgtataacttcaccaatgatccgattcacttcagcggtatggacagtgagcctggctct
cgctccatgaatgtcagcctgtggggctataggaatgacttgagtaaatgggtggtgatc
accatagacttcaagaagctcctcaccagagactgcactgaaggggactatgtacagtgg
ctggctcactctgcagaccccagtggctctaatgatggctgtgtgctgggctataaggag
accttcttgcgactcaggagagactctgtctgttggaacgggagggactatggtgtcact
aagaagctgtctccatgtccatgtacaatggatgattatcactgtgactttggatattac
cgaccagagaacagctcggagtgtgaggagcaggaggagatgaaaggcagccctctggag
ttctgtttaaatgggaccactgaacagctacagaccagtggctaccggaagattccagga
gaccagtgtgagggaggtttccagccagagaggaaagagactgacctggggaggatgtgc
accagcaacgccctttatccaaattctctgactgaaaccagttcactgaatgctgctgtc
atagtgatggtcgtcatagcgctcctcctgacgagtgctgtcgcaggtgtttggctggtt
aagaaatatgtctgcggaggaaggttccttgtgcaccgatactctgtaatgagggaacac
gtcgaagctaataagatagagggagtggatgacattgacccccactacatggagacagga
aaagcacagtacaatgaagattcagatcaggacctcttagaataa
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