Lates calcarifer (barramundi perch): 108889483
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Entry
108889483 CDS
T04895
Name
(RefSeq) DDB1- and CUL4-associated factor 1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lcf01001
]
108889483
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108889483
Enzymes [BR:
lcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
108889483
Protein kinases [BR:
lcf01001
]
Serine/threonine kinases: Other
Other
108889483
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108889483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
WD40
LisH
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
108889483
NCBI-ProteinID:
XP_018541445
UniProt:
A0A4W6E650
LinkDB
All DBs
Position
LG6:complement(17346541..17360959)
Genome browser
AA seq
1557 aa
AA seq
DB search
MASASASVDSKAELTALLEQWERDQQGSTQELVNILTKISELVEKETEEYHKADPDPFDD
RHPGRADPECVLGHLLKILFKNDDFMNTLVNSYVMTSREFSLNAAACRLLQNIMPGLETA
VVFQEKEGIVERLFKWAQEAEQPLRIYATGLLAGAMENQDIAANYREENSVLVPLMLHRL
RELQDKDAENKREIKRPSPRKTLSEPLLPLDEETVDGGFEEKPFTPGRNGAEREGTGPEE
GSEIPFSTIEPENELSFRLNSPHKTSSRINSAVKTMMKPMSAPSSLIYQGMSDGSSYLKR
RAERESGRTSKQKLNFSLPEPERNFSELSNSSWSEMSPWVIGNNYHLYPLTPEIEQRLIL
QYLTPLGEYQELLAVFMQMGARELLMHYMDLKQTNDVQLTFEALKYLASLLLHKKFAAEF
VAHGGVQKLLEIPRPSMAATGVSLCLYYLAYNQDAMERVCMLPHSILSDVVGYTLWLLEC
SHASGCCHATMFFSISFSFRAVLELFDKQDGLRRLVNLISTLEILNPEDQGALLSDDEIF
SSRQTAKHTCMALRRYFEAHLAIKVEQVKQSLQRTEGGAPIHSQPYYKAVSYSREQVVEM
MEFLIEYGPLRLYWEPAEVFHKLSCVQLLLQLISIACDWRTYYGRSDTVRYALDILSILT
VVPKTQLLLSEAVAVLDEGGSTVSTVGMSIVLAVAEGEVFVNDAEIQKSALQVVINCVCA
PDKRMSSIGKFIAGTPRRRLPQQTKASESVLTKMWNVVQSNNGIKVLLSLLTVKMPITDA
DQIRALACKALVGLSRSSSVRQIISKLPLFSSGHIQQLMKEPVLQDKRSEHVKFCKFAAE
LIERISGKPLLIGTDVSLAWLQRASVVAQSRITFPEKELLLLIRNHLMAKGLHDTATTLT
KEADLPMACLSHSSHTTSAFPPVAPPPPASPVATLPRTPRLANGVGSRLGNHPSHSSTPG
SSHPQTRPSTSQPAGSSSSVAFPSTSVPHCSNGSPLIGRIIFSRERQTGCTTVSCKKPRV
LRQKSDHGAFSQSPAMKKQFDRHLPSPPALDSIITEYLREQHARCKNPVATCPPFSLFTP
HQCPEPKQRRQAPVNFTSRHTRRVIYPKYGGVDGGCFDRHLIFSRFRPISVFREADEDES
GFMCCAFSARERFLMLGTCTGQLKLYNVFTGQEEASYNCHSSAITHLEPSRDGSLLLTSA
SWSYPLSALWGMKSVFIMKHSFLGDHYVEFSKLSQDRVIGTKEHIARIYDIQTGQVTLTL
NNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRTAQAIHKFDKFNMNISGVFHPNGLEVI
INTEIWDLRTFHLLHTVPALDQCRIVFNNNGTVIYGAMLQADDEDDMMEMQMKSPFGSSF
RTFNATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQDSVNTDTVCRLYEVGRQRLAEE
EEEDEEDQEDDDQEEDDDDDEDSDDDVDTDPLIAELENENGGEDEDDEEEDDGNDEFSPS
DEEVARLLEEDVDVGDDDDEDDNDEDDSDNDDVDLDGDNDSSDNSDLEDDIILSLNE
NT seq
4674 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggcatctgccagtgtggactccaaggcagagctgactgctctactggaacag
tgggagagggatcaacaaggcagcacacaggagctggttaacatcctcacaaaaatctca
gagcttgttgagaaggagacagaagagtaccacaaagcggaccctgatccttttgatgat
cgacatcctgggagagctgatccagaatgtgtgttagggcacctgctcaagatcctgttc
aagaacgatgacttcatgaacacactggtgaatagctatgtgatgaccagcagagaattt
tccctcaatgcagcagcgtgtcgcctgcttcagaacatcatgcctggattggagacagca
gttgtttttcaagaaaaagagggcatagttgaaaggctgtttaagtgggctcaggaggca
gagcagcccctcagaatctatgccacaggcttgttggcgggtgccatggagaaccaggac
attgcagccaactacagggaggagaactctgttttggtgcctttgatgctgcatcggtta
cgtgagcttcaggataaggatgctgagaacaaaagggaaatcaaacggcccagccccagg
aagactctgagtgagcctttgctacctttggacgaggagactgtcgacggaggctttgaa
gagaagcccttcacgccgggcaggaacggagcagaaagggaggggacggggccagaggag
ggcagtgaaattcccttctcaaccatcgagcctgaaaatgagctttcgttccgtctcaac
tcccctcataagaccagcagccgcatcaactctgctgttaagaccatgatgaagcccatg
tctgccccaagttcgctgatataccaaggcatgtccgatggcagcagttacctaaaaagg
agggcagagagggagagtggcaggacctcaaaacagaagctaaatttctctttgccagag
ccagaaaggaacttcagtgagctttccaacagcagctggtctgagatgagcccctgggtg
attggcaacaactatcatctgtaccctctaaccccagagattgaacagaggctcatcctg
cagtatctcactcctctgggggagtatcaggagctgctggcagtgtttatgcagatggga
gctcgtgagctactcatgcattacatggatctaaagcagaccaatgatgtgcagctcacc
tttgaggccctcaagtacctggcatctttgctgctgcacaagaagtttgctgcagagttt
gtggctcatggaggagttcagaagttgttagaaatccccaggccatctatggctgctact
ggagtatctctgtgcctctactaccttgcctataaccaggatgccatggagagggtttgt
atgttgccccactccatcctgtcagatgtggttggctacacgctgtggctgctggaatgc
tcacacgcgtccggctgctgccatgccaccatgttcttttccatctccttttcctttcgc
gccgtcctggagctgttcgacaagcaggacgggctccgtcgccttgtcaatctgattagc
acactggagatcctgaaccctgaggaccagggagcgctgctgagtgatgatgagattttc
tccagcaggcagacggccaagcacacctgcatggccctgcgcaggtacttcgaggcccat
ctggcaatcaaggtggagcaggtgaagcaatccctgcagcgcacagagggcggtgccccc
attcactcccagccatactacaaggcagtcagctatagccgtgagcaggtggtagaaatg
atggagttcctgatagagtacggaccactccggctttactgggaaccagcagaggtcttc
cataagctgtcttgtgtccaactcctcctgcagctcatttccattgcttgtgactggagg
acctactacggcaggagtgataccgtacgttatgcccttgacatcctgagtatcctcaca
gttgttccaaagacccagctgttactgtcggaggctgtcgcggtgctcgatgagggagga
tccaccgtttccactgttggaatgagtatagtcctggcagtagcagagggagaggtattt
gtcaatgatgcagagattcagaagtcggctctgcaggttgtcatcaactgtgtctgtgct
ccagacaaacgcatgtccagcattggcaagttcattgcaggcacccctcgtcgccgcctg
ccacagcagaccaaagccagcgaaagtgtgctcactaagatgtggaatgtggtgcagtcc
aacaatggcatcaaggtgctgctgtccctgctgacggtgaagatgcccattacagatgca
gatcagatccgagctcttgcctgtaaggctctggtgggtctgtctcgctccagctccgtc
aggcagatcatcagcaaactgcctttgttcagcagcggacacatccagcagctcatgaag
gagcctgtgctccaggacaaacgcagcgaacacgtcaagttctgtaagtttgcagctgag
ctgatagaaaggatctctgggaagccgctgctgattggcacggacgtgtctctggcgtgg
ctgcagagggccagcgtggtcgcacagtccaggatcactttccctgagaaggagttactg
ttgcttattaggaaccaccttatggccaaaggccttcatgacacggccaccacactcacc
aaagaggctgatctcccaatggcgtgtctgtctcattcttcacacacaacttctgcgttc
cctcctgtcgctccacccccacctgcgtctcctgttgctactctgcctcgcacaccgcgg
ctggccaatggtgtcgggtcaagacttggaaaccatccttctcattcatccactcccggg
tccagccatccacaaacacgtccatctacatcgcaacctgctgggtcttcttcttctgtt
gctttcccctcgacatctgtaccccactgtagcaacggttccccactgatcggtcgaatc
attttctctcgtgaacggcaaacagggtgcactacggtgagctgcaagaagcctcgggtg
ctgaggcagaagtctgaccacggggccttcagccagagtccagccatgaagaagcagttt
gacaggcacctgccttccccccctgcattagacagcattatcacagagtacctgcgggaa
cagcacgcacgctgtaaaaaccctgtcgcaacgtgcccccctttctctctcttcacaccc
catcaatgccccgaacccaaacagagacgccaagcacctgtcaactttacatcccgacac
acacggagagtcatatatcctaaatatggaggagtagatggaggatgctttgacagacat
ctcatcttcagcaggttccgtcccatctctgtgttcagggaggctgacgaggatgaaagc
ggattcatgtgttgtgccttctcagctcgtgaacggttcctgatgctcggaacgtgcaca
gggcagctcaaactctacaacgtgtttacaggccaggaggaggccagttacaactgtcac
agttcggccatcactcacctggagccctcacgggatggttctctgctcttaacatcagcc
tcttggagttaccctctgtctgcgctgtggggcatgaaatcagtgttcatcatgaagcat
tcctttctgggcgaccattatgtggagttcagtaagctctcacaggatcgagtcattggg
actaaagaacatatagcacgaatttatgacatccagacagggcaggtaactctgactctc
aacaacccagacctggctaacaattacaagaggaactgtgccaccttcaaccccacagat
gacctggtgttgaacgacggcgtgctgtgggacgtgcgcacggctcaggccatccacaag
tttgacaagttcaacatgaacatcagcggcgtgttccatcccaatggcctggaggtcatc
ataaacacagagatttgggatcttcggaccttccacctcctccacacggttccagctctg
gaccagtgcagaatagtcttcaacaacaacggcacggtcatctatggagcaatgttgcaa
gctgatgatgaagatgacatgatggagatgcagatgaaaagtccatttggttcatcattt
aggactttcaatgccacagactacaaaccaattgccactattgacgtcaagaggaatata
tttgacctttgcacagatacaaaagactgctacctagctgtgattgagaaccaagactct
gttaacaccgacacggtgtgcaggctgtatgaagttggccggcagagacttgcagaggaa
gaggaggaggacgaagaggatcaggaggatgacgatcaggaggaagacgacgacgatgac
gaggactcagatgacgatgttgacacagatccccttatcgccgagctagagaacgagaac
ggcggagaggatgaggatgacgaagaggaggatgatgggaatgatgaattctctccttct
gatgaggaggtggctcgtcttctcgaagaggatgttgacgttggggatgacgatgatgag
gatgacaacgacgaagacgactctgataatgacgacgttgatctggatggcgacaatgac
agctccgacaactctgaccttgaggatgacatcatcttatccctgaatgagtga
DBGET
integrated database retrieval system
