Lates calcarifer (barramundi perch): 108889491
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Entry
108889491 CDS
T04895
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108889491
Spliceosome [BR:
lcf03041
]
Common components
Common spliceosomal components
General mRNP proteins
108889491
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
CDC45
RRM_7
RRM_8
Motif
Other DBs
NCBI-GeneID:
108889491
NCBI-ProteinID:
XP_018541467
UniProt:
A0AAJ7V964
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Position
LG6:complement(17506518..17514430)
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AA seq
583 aa
AA seq
DB search
MPNKTAALKTSQKKKTAKKKKEGKRCDTRPRPTTEKRLHNLAIFDFILACCDLPRRRRRD
ESLQQHIFCDILTLARHFDNFKRIIMADDFDVEAMLEAPFRKDEIKSSHANGHDDQNKKK
RRSRSKSRSPGSRKKRSKSRDRKKGKKRSRSRERKRSRSRERHRSRSRSKERSGRYRARR
SPVKRRSKSRSPFKKEKSPIRQPIDNLTPEERDARTVFCMQLAARIRARDLEDFFSAVGK
VRDVRMISDRNSRRSKGIAYIEFVEASSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAA
ANNLQKGSSGPMRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISF
ADAECAKKALEQLNGFELAGRPMKVGHVTERSDSSTASSFLDNDELERTGIDLGTTGRLQ
LMARLAEGTGLKIPPAAQQALQMTGSIPFGNIAAPAAVPTPAPSQALNLPSQPLATHCLQ
LSNLFNPQAENDPSWASEIQDDVIEECNKHGGIVHIYVDKNSAQGNVYVKCPSIPAAMAT
VNALHGRWFAGKMITAAYVPLPTYHNLFPDSVTAKQLLMPARR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgccaaataaaacagctgctttaaaaacttcacagaagaagaagacggcgaagaagaag
aaggaaggaaagcgttgtgataccaggccgcgacctacgacagaaaaaaggttacataac
ctcgcaatttttgatttcatcttagcttgctgtgacctaccgagacggagacgtcgagac
gagtctcttcagcagcacattttctgcgatattttgactttggcacgtcatttcgacaat
ttcaaacggatcatcatggctgatgattttgacgttgaggccatgctggaggctccattc
agaaaggatgagatcaagtcctctcatgcaaacggacatgacgaccagaacaagaagaaa
aggaggagcagaagcaagagccggagcccaggctctaggaagaaaagaagcaaaagcaga
gacagaaagaagggcaagaagaggagccgtagccgagaaagaaaacgaagccgcagcaga
gagcgccatcgcagccgctccaggagcaaggaacgatctgggcggtatagagcacgcagg
agtcctgtcaagagacgttccaaaagtcggagccccttcaaaaaagaaaagagtcccatc
aggcaaccaattgacaatctaacacccgaggagagggatgcccgcacagttttctgtatg
cagcttgctgcgagaatcagagctcgagacctggaggatttcttctcagctgtcggaaaa
gtcagagatgtgagaatgatctcggacagaaactcgaggagatcaaagggcatcgcatac
atagagtttgtggaggcctcttctgtaccactggcaattggattgactggccaaaggctt
ttaggagttcccatcatcgtccaggcctctcaggctgagaaaaacagagctgcagccgct
gccaataatctacagaagggcagttcaggtccaatgcggctgtatgtgggctcactgcac
ttcaacatcactgaggaaatgcttcgagggatctttgagccttttggaaagatcgaggga
atccagctcatgatggacagtgagaccggacgatccaaaggatatggcttcatatctttc
gcagatgcagaatgtgcaaaaaaggccttggagcagctgaacggttttgagcttgctgga
cgtccaatgaaggtggggcatgttacagagcgctcagactcatcgacagccagttcgttc
ctggacaatgatgagttagagaggaccggcatcgacctcggcactacagggcgtctgcag
cttatggctcgactagcagaaggaactggtctgaagattcctcctgctgctcagcaagca
ctacagatgactgggtccataccgtttggaaacatcgctgctccggcagctgttccaact
ccagctccaagccaagctctgaacctcccatcacagccactggccacacactgcctccag
ctgtccaacctgttcaacccacaagcggaaaatgatcccagctgggcctctgagatccaa
gatgacgtgattgaggagtgcaacaaacatggaggaattgttcacatttatgtcgataag
aactcagctcaaggtaatgtgtacgtgaagtgtccctcaataccagcagcgatggcaact
gtaaatgcacttcatggacgctggtttgcaggcaagatgataacagctgcttacgttcct
ttaccgacctaccacaaccttttccctgattcagtaacagcgaagcagcttctaatgcca
gcacgtcgatag
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