Lates calcarifer (barramundi perch): 108889588
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Entry
108889588 CDS
T04895
Symbol
abcb4
Name
(RefSeq) ATP-binding cassette, sub-family B (MDR/TAP), member 4
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108889588 (abcb4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108889588 (abcb4)
04147 Exosome [BR:
lcf04147
]
108889588 (abcb4)
04090 CD molecules [BR:
lcf04090
]
108889588 (abcb4)
Enzymes [BR:
lcf01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
108889588 (abcb4)
Transporters [BR:
lcf02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
108889588 (abcb4)
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108889588 (abcb4)
CD molecules [BR:
lcf04090
]
Proteins
108889588 (abcb4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
Zeta_toxin
AAA_16
Rad17
RsgA_GTPase
G-alpha
AAA_21
AAA_15
AAA_5
AAA_29
AAA_7
AAA_30
AAA_28
PRK
SRP54
Dak1
Motif
Other DBs
NCBI-GeneID:
108889588
NCBI-ProteinID:
XP_018541648
UniProt:
A0A4W6C721
LinkDB
All DBs
Position
LG15:12377410..12391092
Genome browser
AA seq
1287 aa
AA seq
DB search
MDEKDEMEMLSAAKAGQNGDISENKKDGKKEKAPKEPMVGPITVFRFADTWDIVMILTGT
LMAMANGVVLPLMCIVFGDMTDSFVKDTILSHTNLSSLNLTGIKINSTLQEDMNVYAIYY
SIMGFMVLVAAYLQVSFWTLAAGRQVRRIRKLFFHRIMQQDIGWFDVNETGELNTRLTDD
VYKIQEGIGDKAGMLVQAFTTFFSSFIIGFTKGWKLTLVILAVSPALGVSAAVFSKVLAA
FTTKEQTAYAKAGAVAEEVLSAIRTVFAFSGQDREIKRYHKNLEDAKRMGIKKALSANMA
MGFTFLMIYLSYALAFWYGSTLVLSGEYTIGSVLTVFFVVLIGAFTLGQTSPNIQTFASA
RGAAHKVYSIIDHKPSIDSFSEAGYKPDSIKGNIEFKNINFTYPSRPDVQILNNMSLSVK
SGQTIALVGSSGCGKSTTIQLLQRFYDPQEGSVCIDGHDIRTLNIRYLREMIGVVSQEPI
LFATTITENIRYGRPDVTQSEIEQAAKEANAYDFIMKLPDKFETQVGDRGTQMSGGQKQR
IAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIVVAHRLSTIRNADVI
AGFQKGEVVELGTHSELMEKQGVYHTLVTMQTFQKAEEKEEEAEYELSADEKSPLVQSFS
ETSLFRRKSTRGSSFASEGKKEEKEKFTDDKDKADEDENVPPVSFLKIMRLNLSEWPYML
VGTICAIINGAMQPLFAVIFSKIITVFAEPDPDDIRMKSTFFSLMFAAIGGVSFFTMFLQ
GYCFGKSGEILTLKLRLGAFKAMMRQDLGWYDDPKNSVGALTTRLATDAAQVQGATGVRM
ATLAQNFANMGTSVIISFVYGWELTLLVLAVVPVMAVAGAVSMKMLTGHAAEDKKELEKA
GKIATEAIENIRTVASLTREPKFESLYQENLTVPYKNAQKKAHVYGLTFSFSQAMIYFAY
AGCFRFGAWLIKTGRMDVEGVFLVISAVLYGAMAVGEANSFAPNYAKAKMSASHLMMLLN
KEPAIDNLSHEGEEPDKFDGNVQLDDVRFNYPSRSHLPILQGLNLKVRKGETLALVGSSG
CGKSTIIQLLERFYDPRDGRVLLDKVNVKDLNIHWLRSQIGIVSQEPVLFDCTLAENIAY
GDNSRTVTMEEIQAAAKAANIHNFIEELPQKYNTQAGDKGTQLSGGQKQRVAIARAILRN
PKLLLLDEATSALDTESEKVVQEALDQASKGRTCIIVAHRLSTIQNADRIAVLQGGVVVE
QGTHQQLLAKKGVYHMLVTTQMGHGRD
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atggatgagaaggacgagatggaaatgctgtccgcagccaaagcgggacaaaatggggat
ataagtgagaacaagaaggatggcaaaaaagaaaaagcaccaaaggagcccatggtcggc
cccatcactgtgttcaggtttgcagacacctgggacattgtgatgatccttactgggaca
ctgatggccatggccaacggggtggtgctccctctcatgtgcattgtgtttggtgacatg
acagacagctttgtgaaggacaccatcttgtcccatacgaacctcagcagcctcaacctg
accggcataaaaataaacagcaccttgcaagaggacatgaatgtctacgccatctactac
tccatcatggggttcatggtgctggtggcggcctacctgcaggtgtccttctggaccctg
gcggccgggcggcaggtcagacgcatccgcaagctgtttttccaccgcatcatgcagcag
gacatcggctggttcgatgtcaacgagaccggagagctcaacactcgtctcacagatgat
gtctataagatccaagagggtatcggtgacaaggcggggatgctggtccaggccttcacc
accttcttctcatccttcatcatcggcttcaccaaaggctggaagctcaccctggtcatc
ctggctgtgagccctgcgctaggcgtctcagctgcagtttttagtaaggtgctggcggcc
ttcacaactaaagagcagactgcatatgccaaagctggagctgtagcagaggaggtgctc
tctgccatcaggacagtgtttgccttcagcggtcaggacagagagatcaaaagatatcat
aaaaacttggaggatgccaagagaatgggaataaagaaggcgctctctgctaacatggcc
atgggcttcaccttcctcatgatctacctgtcgtacgctctggccttctggtacggcagt
accctcgtcctgagcggggagtacaccatcgggagcgtgctcactgtgttcttcgttgtg
cttatcggagcctttactctgggacagacctctcctaacatccagacttttgccagcgcc
cgtggagctgcacataaagtatacagcattattgatcataagccgagtatcgacagcttt
tcggaggccggctacaagcctgactccatcaaaggaaacatagagttcaagaacattaac
ttcacctacccctcgagaccggatgtccaaatcttaaataacatgtctctgagcgtgaag
agtggacagaccattgccttggtgggcagcagcggctgtggcaaaagcaccacgatccag
ctgctgcagaggttctacgatccccaggaaggatccgtgtgcatcgacggacacgacatc
cgtactcttaacatccgctacctgagggagatgatcggagttgtgagtcaggagcccatc
ctctttgccaccaccatcactgagaacatcagatacggtcggcccgacgtgactcagagt
gagatcgaacaagccgccaaggaggccaacgcttacgacttcatcatgaaacttccagat
aagttcgagacgcaggttggagaccgagggactcagatgagtgggggacagaaacagagg
atcgcgattgcccgagctctggtccgcaaccccaaaatcctcctgctggacgaagccacg
tctgctcttgatgctgagagtgagaccatcgtacaggctgcactcgacaaggtccggctg
ggtcgcaccaccatagtcgtggctcaccgcctgtcgaccatcagaaacgctgacgtcatc
gctggtttccagaagggtgaagttgtagagctggggactcacagtgagctgatggaaaaa
cagggagtctaccacacgcttgtcaccatgcagacctttcagaaagccgaggagaaagag
gaggaggccgagtatgagctgtctgcagacgagaagagcccattagtccagtccttctct
gagacctcgctgttcaggaggaagtccactagaggctcctccttcgcctcggagggaaag
aaagaggagaaagaaaagttcacggatgacaaggacaaggcagatgaggatgaaaatgtc
ccccccgtgtcgttccttaaaattatgcgtctcaacctctctgagtggccgtacatgttg
gtcgggaccatctgtgccatcatcaatggagcaatgcagccactctttgctgtcatcttc
tccaagatcatcactgtgtttgcagaaccagacccagatgatatcaggatgaaatccact
ttcttctccctcatgtttgctgctattggaggcgtatcatttttcaccatgttcctacag
ggttactgttttggtaaatctggagaaattctcaccctgaaactgcgactcggggctttc
aaggccatgatgagacaggacctcggctggtatgatgaccccaaaaacagtgttggagca
ctcactacaagactggccacagatgctgcacaagtgcaaggggctacaggggttcgtatg
gccacgctggcccagaactttgccaacatgggcaccagtgtgatcatctcctttgtgtac
ggctgggagctgaccctgctcgtcctggctgtggttcccgtcatggcggtggccggagcc
gtgtcgatgaagatgctcacgggacacgctgcagaagacaagaaggagctggagaaggct
ggaaagattgctacagaggccatcgagaatatccgtactgtcgcctctctcaccagagaa
cccaagtttgagtctttgtatcaggagaacctcacagtgccatataagaacgcccagaaa
aaagcccatgtgtacggtcttaccttctccttctcccaggccatgatctacttcgcttat
gccggctgcttccgatttggagcttggctcattaagacgggaaggatggacgtcgagggg
gtattccttgtgatttcggctgttctgtacggtgccatggcagttggagaggccaactcc
tttgctccaaactacgccaaggccaaaatgtcagcttcccacctcatgatgctcctgaac
aaagagcccgccattgataatctttcacacgagggagaggaaccggacaaatttgacggt
aacgtgcaactggatgacgtcaggttcaactacccttcacgatcccatctgcccatcctc
caagggctgaacctgaaggtgaggaagggagagacgctggccttggtggggagcagcggc
tgtggaaagagcaccatcatccagctgctggagaggttttacgaccccagagacgggaga
gtgctgctggacaaagtaaacgttaaagacctgaatattcactggctgagatcccagatt
ggcatcgtatcccaggagcccgtgctgttcgactgcactttggcagaaaacatcgcctat
ggagacaacagccgcaccgtcaccatggaggagatacaagcagctgctaaagcagccaac
attcacaatttcatagaagaactgccacagaaatacaacactcaggcgggcgacaaagga
acacagctgtcgggtggacagaagcagcgtgtagccatagcccgagccatcctccgcaac
cctaaactgctgctgctggacgaggccacctccgcactcgacactgaaagcgagaaggtg
gtgcaggaggcgctggaccaggccagcaagggcaggacgtgcatcatcgtggctcaccgc
ctgtccaccatccagaacgcagaccgtatcgccgtcttgcagggaggagtcgtggtcgag
caggggacgcatcaacagctgctggccaagaagggagtgtaccacatgctggtcaccacg
cagatgggccacgggagggactga
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integrated database retrieval system
