Lates calcarifer (barramundi perch): 108889625
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Entry
108889625 CDS
T04895
Symbol
rorc
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108889625 (rorc)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108889625 (rorc)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
108889625 (rorc)
Nuclear receptors [BR:
lcf03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
108889625 (rorc)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
108889625
NCBI-ProteinID:
XP_018541709
UniProt:
A0A4W6E1T3
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Position
LG15:complement(12216629..12235799)
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AA seq
505 aa
AA seq
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MEYEEPDVPPADTPIKRGGVVSKKTHLTQIEVIPCKICGDKSSGVHYGVITCEGCKGFFR
RSQLPTVSYSCSRQSNCQIDRASRNRCQHCRLQKCLAQGMSRDAVKFGRMSKRQRDSLIA
EVEKHRQQQQQQQQLQGDTQSVLSYPTKARQDRSPQLLQPMASAYSFAGEADLLSYAADV
HPYLVCSPNESQVQGMIYRGSGVSPTSRSQGRGDNSGHPDMRAFDSRQPSHDLMGIHPYN
HLEDPYSMYPHSLRNIDELCASIVRSHRETSQYRVEELQALKWKVFSREEYQAYQSKSVD
EMWQHCAIRLTDAVQYVVEFAKHIPGFRMLSQNDQIALLKTGSMEVVLVRMSRFFNTENN
TVFFDGKFAGVELFKSLACGDLITAVFDFAHDMCALKLTEQQIALFSALVLINADRPCLE
DRGKVQRVQRSVEMGLTHILHRDNQDSLMHKLYQRMAVLRSLCSLHMEKLRWFSQRYPLT
AHSLFPPLYKELFASEAELLPGTTH
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggaatatgaagagcccgacgtgccccccgctgacacccccatcaaaagaggaggagtc
gtgtccaagaagactcatttgacccagattgaagttatcccatgcaagatctgtggtgat
aagtcctctggagtgcattatggagtcattacttgcgaaggctgcaagggatttttccga
cgcagccagctgcccactgtatcctactcatgctccaggcagagtaactgtcagattgac
cgagccagccgcaaccgctgccaacactgccgtctgcagaagtgcttggcacagggcatg
agcagagatgctgtgaagtttggacggatgtcaaaacgtcagagggattctctgatcgct
gaggtggagaagcaccgtcagcagcagcagcaacagcagcaacttcagggtgacacccag
tccgtgttgtcctaccccaccaaagccagacaagaccgctccccccagctccttcagccc
atggcttcggcctactccttcgctggcgaggccgacctgctgtcctacgctgctgatgtt
cacccttaccttgtgtgctccccgaacgagtcgcaggtgcagggaatgatctaccgcggc
tccggtgtctctcccacgtcgagatcccaggggaggggggacaacagtggacatcctgac
atgagagcatttgactccaggcagccatctcatgatctgatggggattcatccctacaac
catctggaggacccttacagcatgtaccctcactccctgcgaaacatagacgagctgtgt
gccagcattgtgcgctcccaccgagagaccagccagtacagagtggaggagctccaggcg
ctcaaatggaaggtgttcagcagagaggagtaccaggcctaccagagcaaatcagtggat
gagatgtggcagcattgtgccattcgactgactgatgccgtgcagtatgtggtggagttt
gcgaaacacatcccaggcttccgcatgctcagccagaacgaccagattgcgctactcaag
acgggctccatggaggtggttctggtcaggatgagtcggttcttcaacacagaaaacaac
accgtcttctttgatgggaaatttgctggagttgaactcttcaagtctctggcatgtggt
gacttgatcacagcagtgtttgactttgctcatgatatgtgtgctctgaagctcaccgag
cagcagatcgctctcttcagtgctctggtgctgatcaacgcagaccgtccttgtctggag
gataggggcaaggttcagcgggtgcaaagaagcgtggagatgggactcacacacattcta
caccgagataaccaagacagtctaatgcacaagctgtaccagaggatggcagtgttgcgt
tcgctgtgcagtcttcacatggagaagctgcgctggttcagtcagcgttaccctctcact
gctcactctctgttccctccactctacaaagagctgtttgcctctgaggcagagctgctg
ccggggaccactcactga
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