Lates calcarifer (barramundi perch): 108889707
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Entry
108889707 CDS
T04895
Name
(RefSeq) cartilage intermediate layer protein 1
KO
K24436
cartilage intermediate layer protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108889707
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
108889707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CILP_C
CILP_8th
CILP
CILP_5th
Mucin2_WxxW
Ig_3
TSP_1
I-set
Ig_2
CarboxypepD_reg
CarbopepD_reg_2
Ig_5
ig
V-set
TSP1_CFP_C
Izumo-Ig
Motif
Other DBs
NCBI-GeneID:
108889707
NCBI-ProteinID:
XP_018541834
UniProt:
A0A4W6F0R8
LinkDB
All DBs
Position
LG2:complement(3092662..3099820)
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AA seq
1161 aa
AA seq
DB search
MSLPLLILGIIAANVVASQGSWRKDNKESGPAVYHSDENYEWTTWFNVDHPGGRGDYEQL
DAIRFYYRARVCETPRAIEARTTEWVPARETGEKVHADPTVGFWCLNEEQGPDRNCSNYA
VRFLCPKDNSVNIQGTWGPWSDWGPCPAPCGQVGVQIRSRNCQSRSMPCSGPKVEGRPCN
GPECPRTDCYLQCLMGRVNAECDACMCEEHILLGSVRGAGGLTAEGATILRYGKLLTLTD
HNGHFRIPGICPDGNTTLTVSLQGHVTLNVVVPNSTERTSVLSVHLKRTEKLRVLGNLES
KARRQGQTAAFCCKVAGTPQPDKYQWFHNDSLLEKQSENTLVLKDLRPEQAGEYYCRASG
PSGAIKTKPATLKVLGRNEHSCNPKPESHLIRLPHDCYQNSTNSFYYDVGKCPSGTCVGQ
LDNGIRCKDKVAYCCGVEKMEERQLTCQGYQLPTMVVTECGCQKCVDTKAVVHGRAIAAD
NGEPMRFGHVFMNGVRISRTGYKGTFSIQVPPDTERLVLTFVDNMQKFVNTTKVLPFNTK
GGAVYHEIKLLRKKEPITISSTETNTLELGEVEGQEAMVEIQIPPHSFYKENGEVFTGNV
NASVTFLDPRDVSTAAAAQSDLNFVGDEGDTLPLRTYGMFSVDFRGEENNEPLNAGEVKV
FLDSAQVKMPEHLNTMKLWSLNPDTGLWEEEGSLQMEKKRRGKREERTFLIGNMEIRERR
LFNLDVPENRRCYVKVRAFRSERFMPSEQVEGVVVSLINMEPTAGFSSNPRAWGRFDSVV
TGPSGACLPAFCDEQKTDAYSAYVMANLGGEELEAVPSSPKLNPNLIGVPQPYLGKLNYR
RTDHEDPRVKKTAFSINVAKPSPNTAEEGNGPVYAFEKLKECEEAPFSAAHFRFSRVEGD
RYDYNTVPFNEDDPMSWTEDYLSWWPKPMEYRACYIKVKISSPHEINVRSRNMGGTHPKT
VGQLYGLRDTRSIRDMDQTTVSAVCVEFKCSGMLYDQERVDRTLVKVIPQGSCKRDHVNT
MLQEYLVNHLPLAVNNDTNEFTMLAPLDPLGHNYGIYTVTDQDPRTAKEIALGRCFDGTS
DGTSRVMKSNEGVALTFTCGDREVTRQSVFQAVQGSQSQTVTSVVRGDGRQNRRRQRANA
SRSSRRRSTRNPTGRRTEARS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgcctcttctcatcctgggaatcatagcagccaatgttgttgcttctcaagga
tcatggagaaaggacaacaaagagtctggtcctgctgtctaccactcagatgaaaactat
gagtggaccacatggttcaatgttgatcaccccggaggtcgtggagactatgagcagctg
gatgccattcgcttctattaccgtgcccgagtgtgtgagactccacgggcgatcgaagcc
agaaccactgaatgggtcccagctcgtgagactggggagaaggtccatgcagaccccact
gtgggcttctggtgcctcaatgaggagcaaggtcccgatcgcaactgctccaactatgca
gtccgcttcctctgtcccaaagataacagtgtcaacattcagggtacctggggcccgtgg
tcagactggggcccatgccctgccccctgtggtcaagtgggggtccaaattcgctccaga
aactgccagtctcgctctatgccttgcagtgggcctaaagtagaaggaagaccatgcaat
ggacctgagtgcccaaggacagattgttacctgcagtgtctgatgggaagggtgaatgct
gagtgtgatgcatgcatgtgtgaagagcacatcctgttgggttctgtacgtggtgctgga
ggtctcactgctgaaggggctacaatccttcgctacggcaagctccttacccttactgac
cacaacggacatttccgcattcctggtatctgccctgatggcaacaccacgctgacagtc
agcctccagggtcatgtcaccttgaatgttgttgtgcccaacagcactgaacgcacctca
gtcctcagtgtccacctgaaaagaacagagaaacttcgtgtgttgggcaaccttgagagc
aaggccaggaggcagggacaaactgctgccttctgctgcaaagtggcaggaaccccacag
ccagacaaataccaatggtttcataacgacagtctcctggagaagcagtctgagaacacc
ttggtcctgaaagatctgcgtcctgagcaggctggggagtactactgcagagcaagtggt
ccatctggggctattaagaccaaaccagctacactcaaagtcttaggtagaaatgagcat
tcatgtaaccccaagcctgaatcccacctcatccgtcttccgcatgactgctaccaaaac
agcacaaactccttctactatgatgtgggcaagtgtccctcaggtacatgtgttggacag
ctggacaatggcatcaggtgcaaagacaaagtggcttactgctgtggtgtggaaaagatg
gaggagaggcagctaacatgccagggctaccaactgcccaccatggtggtgactgagtgt
ggctgccagaagtgtgtggacaccaaggctgttgtgcacggtagggccattgctgcagac
aatggcgagccaatgaggttcggccatgtctttatgaatggagtcagaatcagtcgtaca
ggctacaaaggtaccttctccatccaagtccctccagacacagagaggttagtcctgact
tttgtggacaacatgcagaaatttgtcaacaccacaaaggtacttccattcaacaccaaa
ggaggggctgtttaccatgagatcaaactcctgagaaagaaagagcctatcaccatcagt
tccacagaaaccaacactctggagcttggggaggtggagggtcaggaggcaatggttgag
atccagattcctccccattccttctacaaggagaatggagaagtcttcacgggtaacgtc
aatgccagtgtaacgtttctcgacccaagagatgtctccacagctgctgcagctcaaagt
gacctcaattttgtgggagatgaaggagataccctgccactgagaacctatggtatgttc
tcagttgactttaggggtgaggaaaacaacgaacccctgaacgcaggtgaagtgaaggtg
ttcctggattctgctcaggtgaagatgcctgagcacctcaacaccatgaagctgtggtca
ctgaaccccgatactggcctgtgggaggaggagggaagtctgcagatggagaagaaaaga
cgaggcaaaagggaggagagaacctttctgattggtaatatggagatcagagagagacga
ctgtttaatctggatgtcccagagaaccgcaggtgttacgtcaaagtgagggccttccgc
agtgagcgcttcatgcccagtgagcaggtggagggagttgtggtgagtctcattaacatg
gagcccacagctggtttctcctctaacccacgtgcctggggccgattcgatagtgtcgtc
actggccccagtggtgcctgtcttcctgccttctgtgatgaacaaaaaactgatgcctac
tctgcctatgtcatggccaaccttggaggggaagaactggaggctgtcccctcttctccc
aaactcaatcccaacctcattggagtgccccaaccttacctgggtaaactgaactacaga
cgcactgaccacgaagaccccagggtgaagaaaacagcattcagcatcaatgtggcaaaa
ccaagtcccaacacagctgaggaaggcaacggaccagtgtatgcattcgagaaattgaaa
gaatgtgaggaggccccattcagtgcagcacacttccgcttctcaagagtggaaggagac
cgctatgattacaacacagtgccgttcaatgaagatgacccaatgagctggacagaggac
tacctgagctggtggccaaagcccatggaataccgggcctgctacattaaagtcaaaatc
agtagtccacatgagatcaatgtgcggtcacgcaacatgggtggcacccatcccaagaca
gtgggccagctgtatggtctccgagacactcgcagcatccgtgacatggaccagacaact
gtatcagctgtgtgtgtggagttcaagtgcagtgggatgctgtatgatcaggaacgtgtc
gatcgtaccctggtgaaggtgattccacaaggaagctgtaagagagaccatgtcaacaca
atgcttcaggagtatctggtcaaccacctgcccctagccgtcaacaatgataccaatgag
ttcaccatgttagcccctcttgaccctctgggccataactacggcatttatacggtgaca
gaccaggatccccgcacagctaaagagattgcacttggacgctgctttgacggtacttcg
gatggcacatctcgagtcatgaagagcaacgagggcgtggcgttgacgttcacctgtgga
gatcgtgaggtgacacgccagagtgtcttccaagccgtgcagggttctcaaagtcagaca
gtaacaagtgtggtgagaggagatggccggcagaaccgacgccggcagagagcaaacgca
tctcgcagcagtcgacgacgtagcaccagaaatccaacaggaagacgcacagaagccaga
agctaa
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