Lates calcarifer (barramundi perch): 108889751
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Entry
108889751 CDS
T04895
Symbol
sdc4
Name
(RefSeq) syndecan-4
KO
K16338
syndecan 4
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04512
ECM-receptor interaction
lcf04514
Cell adhesion molecule (CAM) interaction
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108889751 (sdc4)
04514 Cell adhesion molecule (CAM) interaction
108889751 (sdc4)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108889751 (sdc4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lcf00535
]
108889751 (sdc4)
Proteoglycans [BR:
lcf00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
108889751 (sdc4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
108889751
NCBI-ProteinID:
XP_018541890
LinkDB
All DBs
Position
Unknown
AA seq
211 aa
AA seq
DB search
MLNLCLVLILSASVFSESQVRETETWMPMKTTQKDPMSTHRDDLESSGDSLNGSDFGFTD
DEDKDDDNGYTDTLYDDEDEYDESSGSGDGESKTSAKPDVNDNKIPEVKPPVRPTVNEVE
IVRNSNEIPLQRNEAETGEPSNVLMAHASDDSIFNKTEVLAALIAGGAVGLMFAVLLILL
LIYRMKKKDEGSYDLGKKPIYKKAPTTEIYA
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacctctgcctcgtgttgattctgtctgcctccgttttctcagagtcgcaggtt
agggagacggagacatggatgcccatgaagaccacacagaaggaccccatgtcgacgcac
cgcgacgacctggagtcatcgggagactccctgaacggctccgacttcggcttcacggac
gacgaagacaaagatgacgataatggatacaccgacacgctgtacgatgatgaggacgag
tacgatgagtcctctgggtctggagatggagagtccaagacatcagctaagcctgatgtg
aatgacaacaagatcccagaggtgaaacccccggtgcgaccaaccgtcaatgaggtggaa
atcgtccggaacagcaacgagatccccctgcagaggaacgaggcggagactggcgagccg
tccaacgtcctcatggcccacgccagcgacgacagcatctttaacaagacggaggtcctg
gcagctctgatcgcgggcggcgctgtcggcctgatgttcgccgtcctcctcatcctcctc
ctcatctaccgcatgaagaagaaggacgagggcagctacgacctggggaagaaacccatc
tataagaaggcccccaccacagagatctacgcataa
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