Lates calcarifer (barramundi perch): 108889777
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Entry
108889777 CDS
T04895
Symbol
cpne1
Name
(RefSeq) copine-1 isoform X1
KO
K24526
RNA-binding protein 12
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108889777 (cpne1)
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108889777 (cpne1)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Motif
Other DBs
NCBI-GeneID:
108889777
NCBI-ProteinID:
XP_018541918
UniProt:
A0A4W6CCS7
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Position
LG12:4986506..5011423
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AA seq
902 aa
AA seq
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MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEHGEAFIVFATDEDARLGMMRT
GGSIKGSKVSLLLSSKTEMQNMIELSRRRFEAGAGAVEAAAPPAGNANRQAGAAPIPTVQ
AGPGGRSGSHGNQGFSNTSASVTAASSAQEPPSNKAAASLASVVPCFPNSYSSAPTITTA
LASLNAGPPPIPPLPSMPSMPPMPTLPTIPVPPPVSSLPPVPTVSPLSQGPPVPPMSHLP
HMSSLPPFNPSLPPPAGLGSGLPLGTPNPMLFNPLSPLASLGLQAHMKAAAAAATGAVNP
DELFVLLQNLPFSCSEMEVREFFRGLGVDGVRLLRDGQGRPTGRAIIKFFSPQDSFEAVK
RGGGMMGQRFIEIAPASERQWASLNDGATGHAPHNSSKSNNSNESQDQQHRRGNAGTGGR
DQRGRSRSPHRQEFCVYLKGLPYEADKKQIKEFFKNLAIVEDTIYIAYGPNGRATGEGFL
EFKTEQDYKTALGAHMQYMGTRFIQVHPISRKGMLEKIDTIRKREAAQGDGKNQDGMKTP
RNCAHITNIPYNVSKKDVRAFLEGVGLYEDTLKVLTDSHGNGLGQAIFQLRTEEDARKAE
RLHRQKLNGRDAFVHLVTFDQMKEIERNPPPQNKRGQRNQNQNQQNQIQNQHQQTQPSPQ
QPQINPFAGISGEEFNFLRNTMGNLNSAPFMTPFSAPGNGLAGPPPLPPLAAGLGDVNLG
VAPPLVAGLPGAPILEPPGFRPGAGGGAPFSQDGLRGLVPFDSANRKGGGGGQNRAGGAN
NNQGRPGGGATGGQQVFTPGADGLRNQPAPGASNNPNSQRGAAGPTIVKLQNMPFTVTVD
EIMDFFYGYQVLPGSVCLQFSEKGLPTGEAMVAFQSHEEAAAAVMDLNDRPIGARKVKIS
LG
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagtcatcagactgcagggtctgcccatagtggccggcaccatggacatcaga
cacttcttctctggcctcaccatccctgacgggggagtgcacatcgtggggggtgagcat
ggcgaggccttcatcgtctttgccactgacgaagacgctcggctggggatgatgcgtaca
ggcgggtccataaagggctccaaagtgtcgctgttgcttagcagcaagacagagatgcag
aacatgattgaactcagccgccgcaggtttgaggctggcgcaggtgctgttgaagcggct
gcacctccagcaggaaatgctaaccgacaagctggtgcggcccctatacccacagtgcag
gcaggaccaggggggagaagtggcagccatggaaaccagggtttcagtaacacctcagcc
tcagtgacggcagcaagctcagctcaggagccaccaagcaacaaggcagcagctagcttg
gccagtgtggtgccctgcttccccaacagctacagctctgcacccacaatcaccacagca
ctggcgtctctcaatgcaggccccccacccatccctccacttcccagcatgccttccatg
ccccctatgcccacgctgcccaccattccagttcctcctccagtgtcctccctccctcct
gtccccactgtctctcccttgtctcaaggacctccagtgcctcctatgtcccacctcccc
cacatgtcctctctgcctcccttcaacccctccctacctcccccagcaggactgggctct
ggcctccctcttggaacccccaaccccatgctgtttaatcctctctcccctctggcctct
cttggccttcaggcccatatgaaggctgctgctgctgcagccacaggagcagttaatccc
gatgagttgtttgtccttctacagaacctcccgttctcctgctcagagatggaagtcagg
gagttttttcgggggctgggcgtggacggggttcgtctgctgagagatgggcagggtcgg
ccaactggcagggctattatcaagttcttctcgccacaggacagctttgaagctgtgaag
cggggagggggtatgatgggccaaaggtttattgagatcgccccagcctctgagcggcag
tgggccagcctcaatgacggcgcaacaggccatgctcctcacaatagcagtaaatcgaat
aacagcaatgagtcacaggaccagcagcaccgccgtggtaacgctgggacaggaggcagg
gatcagcgaggaaggtcaagatctccccatcgacaggagttctgtgtctacctgaagggt
cttccctatgaggctgacaagaaacagattaaggagttctttaagaatttggctattgtg
gaggacaccatctacattgcttatgggccgaatgggcgagccacaggagagggcttcctt
gaattcaaaacagaacaggactacaagactgctctgggtgctcatatgcagtacatgggc
acccgattcatccaggtccacccaatcagccggaagggaatgcttgaaaagattgacacc
atccgcaaacgtgaagcagctcagggtgatggcaagaaccaggatggtatgaaaactccc
aggaactgtgcccacatcaccaacatcccttacaacgtctccaagaaggatgtccgtgcc
ttcttggagggtgtggggctttacgaggacaccctgaaggttctgacagatagccatggc
aatggtttagggcaagctatcttccaactgcggactgaggaagacgctcgcaaagctgag
agactgcatcgtcaaaaactcaatggccgtgatgcctttgtccacctggtgacctttgac
caaatgaaggaaattgagaggaatcctcctccccagaacaagaggggtcaacgcaaccag
aatcagaaccagcagaaccaaattcagaatcagcaccagcaaacccagccaagtccacag
cagccccagatcaacccatttgctgggattagtggggaggagtttaattttctcagaaac
acaatgggcaatctcaatagtgcaccttttatgactccgttttcagcaccaggaaatgga
ctggcgggccctcctcctctgcctcctctggcagcgggcctgggggatgtgaatctgggc
gtggctcctccactagttgctggtcttcctggagctccaatcctggagccaccaggcttt
cgtcctggtgctgggggaggagctccatttagtcaggatgggctgagaggcttggtgccc
tttgacagtgccaacagaaaaggaggtggaggaggacagaaccgggcaggaggagctaac
aataaccaaggacgtccagggggtggggctactggtggacagcaggtgttcactccagga
gctgacggtcttcgtaaccagccagcccctggagcatccaacaatcccaatagtcaacgt
ggtgccgccggcccgacaattgtaaaacttcagaacatgccgttcactgtgaccgtggac
gaaatcatggacttcttctacggctaccaggtgctgccaggctcagtctgcctgcaattc
agtgagaaaggcctgccaactggtgaggccatggtggccttccagagccacgaggaggct
gctgccgccgtcatggaccttaatgaccggcctattggcgcccggaaggtcaaaataagc
ctgggttaa
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