Lates calcarifer (barramundi perch): 108889788
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Entry
108889788 CDS
T04895
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108889788 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108889788 (arid1aa)
03021 Transcription machinery [BR:
lcf03021
]
108889788 (arid1aa)
03036 Chromosome and associated proteins [BR:
lcf03036
]
108889788 (arid1aa)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
ARID
108889788 (arid1aa)
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108889788 (arid1aa)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108889788 (arid1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
108889788
NCBI-ProteinID:
XP_018541935
UniProt:
A0A4W6CKL0
LinkDB
All DBs
Position
LG15:complement(23681429..23697937)
Genome browser
AA seq
2320 aa
AA seq
DB search
MAAQVASAATLNTSPPSELKKPDRDPKEESVPGEKQSDKKQPGLDSGSPGRGDLQDGADG
GNAGGGGEPEMKNGNGNPPRANNNNQNDSVGPEGNNHPGLVHHHGTAFPPPSYGYSQPYG
RAPFHQHGGQQSPGMAAAAGPVVQSSNMMDPYQPNSHDHGFSNHQFNNYNPFPNRTPYPG
QAYAMNSPRSTQAPTAGGQPAKQQPPAGGPTAMAGSYSNQRYNIGNPQPTSTPTLNKLLT
SPSSTRGYPNYPSSDYSSQEGASKGPADMGSSGQYGGSNPGWPQRSHHPSPMSPGSAGQP
LVRNQPPGPMDPMGKMRGQLYGAGGPYSQQSQQGPPTGPQQGPGYPGQGYGPPGPQRYPV
GMQGRTPGGMGGMPYGPQMGSYGQQGPGSYGSQGQAPYYGQPGQAPHPGQQQTPYSQPPP
GQPGGQTPYPGQPHPVQSSAPHNQGGPPYQQPHMPPQPQGPLPGPPQGPPQSQPPYSQAS
APQSGQSPYAQQQGPPSQAQQQPSSQAPPGSQGQSSYPGSTQGPQQPPSQQQQAQSQPPQ
QPQGHSQHPQGQPAGYPQNPQQQQQQQQQQQAQQSPYQRFPPPQQQDVSQDSFQSNAPPS
TQPKSGPEDSQGRPSSLPDLSGSIDDLPTGTEGALSPGVSTSGVSSSQGEQSNPAQSPFS
PHTSPHLPGIRGPSPSPAGSPASASTPRTGPLSPANMPGTQMPPRPSSVQSDGSLHPAMS
QSPMAQDRGFMQRNPQMPPYGSPQSASALSPRQSSGGQMHPGMAPYQQNNSMGGYGQQGG
QYGPQGYPRQPGYGNMPNANYPGPGMGPMNPMAGQGGGPPYAGMPPGRMPPNQMGARPYG
PNMGPNMGPNMGPNMGPNMPPNMPPNMGNMPPQVGSGMCPPPGMNRKPQDPAAMQHPATN
SMHNRMPGYPNMSQGMMGSGPPYGPPMNNMPGMMNTQGGSPYPMGPNMANNSSGMAPSPE
MNNKMNNKVDGSGTPKPDSKSKKSNSSTTTSEKITRLYELGPEPDRKMWVDRYLAFIEEK
AMGMTNLPAVGRKPLDLFRLYMSVKEIGGMTQVNKNKKWRDLATALNVGTSSSAASSLKK
QYIQCLYAFECKVERGEDPPPEIFSDNKKNQAAKVQPPSPASLCSTAGSGSLQGPQTPQS
TSSSMAEGGDLKPPTPASTPHTQMPPMPPVSRSSVNLQDPFSEGNDPAFPRKNMTPNSAY
QSGMNTPDMQGRMGTYEPNKDPFGNIRKVGEQFLPANQGPNSGLGDQQQQQPPQQQQQQQ
QQPPFNRGPPGAMGTMPMGPRQQYPYGPGYDRRSEQGMGPEGNMGSGAPQPNPMMPANAD
TGMYSPNRFPPQQPRHDSYGNQYPGQGTPPTGSYPNQQPGMYPQQQQQSYKRPVEGGYPP
SKRHETEYSGPFPGGQQPPQQQQQQGGASAPSSGQQESYNQYSGSGPYSGSDRRPPGPGN
QFPFPFGRERMQGAAGPNAQPNMPPQMMQSGPEGPQGGMWQGPRDMNYQNYPSRQGGPGG
PPQGPGYPGMNRSEEMMSSEQRMNHDGQWGGQMGPRQPPYGPAGPGQPMPRSVQSNYQPP
QGVQNHIPQVSSPASMPRPMESRTSPSKSPYMHGVMKMQKAGPPVPASHIVPPPVQSPLI
RRDMPFPPGSVEATHPVLKPRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILL
YDDSSISTFDLNTLPGLLELVVEYFRRCLIEIFGILREYEVGDPGQRTLLDPDALKRAWD
GTEEEEPRAEDMEQEEEDDEEEEERETEGPAHVKEEEEQEQCSKSRGRDEKTEDEERKSK
SSSSEQTGSSQSLPAHERPKQASKFDKFPLKVVRKKDPFVGSQSNNHGKLQEFDSGLLHW
SAGGGDSTEHIQTHFEPRKDFLEPRERIPVPPLLLKRRVLEEEILENCLPTEEEKRKHQD
EEETPKEASPSEKATVSEKASPSPSSEEERKTLSETKTVEKGASNHQENNRSVLSSSSVL
TKQAQQTGTILEDEPHSKDEGPLIALANWQDSLARRCICVSNIVRSLSFVPGNDHEMSKH
PGLLLLLGRLILLHHRHPERKQAPLTYEKDEDSDEGVGQRDEWWWDCLELLRENTLVTLA
NISGQLDLSVYPESICLPLLDGLLHWAVCPSAEAQDPFPTLGPHSALSPQRLVLETLSKL
SIQDNNVDLILATPPFSRLEKLYGNLVRLIGDRKVAVCREMAVVLLANLAQGDTMAARAI
AVQKGSVGNLLGFLEDSLAATQLQQSQSSLLHLQGMHFEPTSPDMMRRAARALHALAKVE
ENHSEFTLHESRLLDLSVSPLMNSLVSHVICDVLFLIGQS
NT seq
6963 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgccgccactcttaacactagcccgccttccgaactcaaa
aagccggatcgagaccccaaggaggagtcggtaccgggggagaagcagtcagacaaaaag
cagccgggcttggacagcggatcgccgggccggggggatctgcaggacggggccgacggt
ggaaatgcagggggaggaggggaacctgagatgaagaacgggaatgggaacccgcccagg
gctaacaataataaccagaatgactctgtcggaccggagggaaataaccatcccggtctg
gtgcatcaccacggcaccgcttttcctccaccttcgtacggatatagtcagccctacggt
cgggccccttttcatcaacatggcggacaacaaagccctggcatggcagctgctgcgggt
ccggtcgtgcagtcgagcaacatgatggacccgtatcaacctaattcacacgatcatggc
ttttcaaaccaccagtttaacaattacaacccattcccgaacaggactccctatcccggc
caagcgtacgccatgaactcccctcgcagtacccaggcgccgacagctggggggcagcca
gctaagcagcagccaccagcgggaggacccacggcgatggctggatcatacagtaaccag
agatataacattggaaaccctcagcctacgtccacaccgacactcaacaagctcctaacc
tcccccagctcaacgcggggatatccaaactacccgtctagcgactacagtagccaagaa
ggagctagtaagggaccagcagacatgggcagtagcggtcagtatggagggagcaatccg
ggttggccacaaagaagccatcacccgtcgcctatgagcccgggaagtgccgggcagccg
ctagttagaaaccagccacctggtcccatggacccaatgggaaaaatgagaggtcagctc
tatggagcaggcggtccatacagtcagcagtcgcagcaggggcctcccacaggtccacaa
caggggcccggttaccctggtcagggttatggacctccaggtccccaacgatacccagtg
gggatgcaaggacgtacccctggaggcatgggtggcatgccatatggtccacagatgggg
tcttatggacagcagggaccaggaagctacggctctcagggccaggcaccatattatggc
cagcctggccaggctcctcatccaggccagcagcagaccccctactcccagcccccacca
ggacaaccaggtggccagacaccttatccagggcaaccgcatcctgtgcaaagttctgct
cctcacaaccagggaggaccaccctatcagcagcctcacatgcccccacagcctcagggg
ccactgccaggcccaccccaagggcccccacagtctcagccaccttattctcaagcctca
gccccacagtctggccagtctccctacgcccagcagcagggccctcccagtcaggcccag
caacagccaagctcccaggctccccctggatcacagggccagtccagctaccccggatcc
acgcaggggcctcagcagcctccctcgcagcaacagcaggcgcagtctcagcccccacag
cagccacagggacacagccaacacccacagggccagcctgcagggtacccacagaacccc
cagcagcagcagcagcagcagcagcagcagcaagcacaacagtcaccttatcagcgcttt
cctcctccacagcagcaggatgtatcacaggactcatttcagtccaacgcccctccatcc
actcagcctaaatctggcccagaggacagtcaaggccgcccctccagccttccggacctg
tcagggtccattgacgacctgcccacaggtacagagggcgctctgagtcccggcgtgagc
acgtcaggcgtgtcgagcagccagggcgagcagagtaacccggcccagtcgcccttctct
cctcacacgtctccccacctgccaggcatccgagggccttcaccttctccagctggctcc
cccgccagcgccagcacacctcgcacgggaccgctgtcacctgccaacatgccagggacc
cagatgcctcccaggccatcgagtgtgcagtcagatgggagcctacaccctgcgatgagc
cagtctcctatggcccaggacagagggtttatgcagagaaaccctcagatgcccccttac
ggctccccccaatcagcctctgcattgtcgccgcgccagtcctcagggggacagatgcat
cctgggatggccccatatcagcagaacaactccatgggtggctacgggcagcaaggagga
cagtatggcccccaaggttatccccgtcaacctggctatggcaacatgcccaacgccaac
tatcctgggccgggcatgggcccaatgaaccccatggcgggacagggtggggggccacca
tatgctggcatgcctccaggaaggatgcctccaaatcaaatgggggcacgtccctatggc
cccaacatgggccccaacatgggccccaacatgggccccaatatgggccccaacatgcct
cctaacatgcctcctaacatgggcaacatgccaccccaggtaggctcaggaatgtgtcct
cctccaggcatgaacagaaaaccccaggaccctgcggccatgcagcaccctgccaccaac
tccatgcacaacaggatgcctggttaccccaacatgtctcaaggcatgatggggtctggt
ccgccttatggcccacccatgaacaacatgccgggcatgatgaacactcaaggcggatca
ccttatccaatggggccaaacatggctaataactcaagtggtatggcccccagtccagag
atgaacaataagatgaataacaaagtagatgggagtggaacgcccaagccagattctaaa
tctaagaagtccaattcttccaccacaaccagtgaaaagataacacgtctgtatgagctg
ggaccggagccggacagaaagatgtgggtagaccgttatttggccttcattgaagagaaa
gccatgggcatgaccaacctgcctgctgtaggacgcaaacccctcgacctcttccggctg
tatatgtcagttaaagagatcggaggcatgacacaggtgaataagaataagaaatggcgt
gatctggccacagccctcaatgtgggtacatccagcagtgctgccagttctttgaagaaa
cagtacattcagtgtttgtatgcctttgagtgcaaagttgagcgcggtgaggaccctccc
cctgagattttttcagataacaaaaagaaccaagctgctaaggtccagccaccttctcca
gcgtccctctgctccacagctgggtcgggctctctgcagggtcctcagacaccccagtcc
accagcagctccatggctgaggggggcgacttaaaacctcccaccccagcctccactcct
catacccagatgcctcccatgccacccgtatccaggagcagcgttaacctgcaggaccca
ttctctgaaggaaatgaccccgctttccccaggaagaacatgacacccaactctgcctat
cagtctggcatgaacacaccggacatgcagggccgcatgggcacctatgaacccaacaaa
gacccctttggtaacatacggaaagtcggggagcagtttctacctgctaaccagggccct
aacagcgggctgggtgaccaacagcagcagcaaccgccacaacagcagcagcagcaacag
cagcagcctccattcaacagaggaccacctggggccatgggcacaatgccaatggggccc
agacagcagtatccttatggaccaggctatgacaggagatcggagcaaggaatgggccca
gagggcaacatgggatccggtgctcctcagccaaaccctatgatgcctgccaacgccgac
acggggatgtattcgccaaatcgcttcccaccacagcagccacggcatgattcctatggt
aatcagtatcctggacagggaacgccccctactggctcctacccaaatcagcagcctgga
atgtacccacaacaacaacaacagagttacaagcgtcctgtggaaggtggttaccctcca
tcaaaacgtcatgagacggagtacagcgggcctttccctggtggacaacaaccaccgcag
cagcagcaacagcaaggaggcgcctctgcaccctcttcaggacagcaggagtcgtacaat
cagtacagcggcagtgggccctactccggctctgatcgccgtccacctggcccaggcaat
cagttccccttcccctttggccgtgagcggatgcagggggcggcgggacccaacgcccag
cccaacatgccccctcagatgatgcagtcagggcctgagggtcctcagggaggcatgtgg
caaggaccgcgagacatgaactatcagaactaccccagccggcaaggcggccctgggggc
ccgccccagggacccggttaccccgggatgaaccgctcagaggagatgatgtcatcagaa
cagcgcatgaatcacgacggccagtggggtggccagatgggcccacggcagcctccctat
ggtccagcagggcctggccaacccatgcctcgttcagtacagtccaactaccagccccct
cagggcgtgcagaaccacattccacaggtgtccagcccagcctccatgccccgccccatg
gagagcaggacatcacctagtaaatctccctacatgcacggagtaatgaagatgcagaag
gctgggcctccagtgcctgcatctcacatagtgccccctccagtgcagtcgcctctaata
aggcgagacatgccttttcccccaggctctgtagaagccacccatccagtactgaaacca
cgccggagactcaccatgaaagatattggaacgccggaggcctggagagtcatgatgtca
ttaaagtctggtttattggctgagagtacgtgggccttagataccatcaacattctccta
tatgatgacagcagcatttccactttcgatctcaacacgttgcctggcctactggagttg
gtggttgagtatttcagacgctgtctcattgaaatctttggcattctgcgggagtacgaa
gttggagaccctggccagaggacactacttgatcctgatgccttgaaacgagcctgggac
ggcacagaagaagaggagccacgggctgaggacatggaacaagaggaagaagatgacgaa
gaggaggaggaacgagaaacggaggggccagctcacgtgaaagaggaggaggagcaagag
cagtgctctaaatctcggggcagagacgagaagacggaggacgaagagaggaagagcaag
agttcttcatctgaacagacgggctcatcgcagtccttacctgcccatgagagacccaaa
caggccagcaagtttgacaagtttcccctaaaggtggtacgaaagaaagacccgtttgtg
ggcagccagtctaataatcacgggaaactgcaagagtttgacagcgggttgcttcactgg
agtgctggagggggagactcaactgaacacatccagacccactttgaaccacgcaaggac
ttcttggaacctcgagaacgaatacctgtgccccctctattgctgaagagacgagtccta
gaagaagagatactggaaaattgtttgccaactgaagaggagaaaaggaagcatcaggat
gaagaagaaacaccaaaagaagcatctccctcagagaaagcaacggtctcagagaaggcc
agcccctcgcccagcagcgaggaggagaggaaaacgctttctgagacaaagacagtggag
aaaggtgcttcaaaccaccaggagaataatagatcagttctttcctccagcagtgtttta
accaagcaggcacagcagactggcaccatcctggaggatgagcctcacagtaaagacgag
gggccgctcattgcactggctaactggcaggattctttagcccgccgctgcatttgtgtc
tccaatattgtccgcagcctctcctttgtgccaggcaacgaccacgagatgtccaagcat
ccagggctgctgctgctgctcggtcgcctgatcctgctccaccacaggcaccctgagcgc
aaacaggccccactcacctatgagaaggatgaggattcagacgaaggagtgggccaaagg
gatgaatggtggtgggactgcttggagctcctgagggagaacacactggtcactttggcg
aacatctcaggccaactggacctatccgtctacccagagagcatctgcttgcccctgttg
gatggtcttctccactgggccgtctgcccctcagcagaggcccaggaccccttccccacc
ctgggcccccacagtgctttgtcacctcagagactggtcctggagacgctaagcaaatta
agcatccaagacaacaatgtggacctcatcctggccactccaccattcagtcggttggag
aagctatacggaaacctggtgcggctaattggagacaggaaggttgcagtctgcagggag
atggctgtggtcctactggccaacctggcacagggtgataccatggcagccagagcaatc
gctgttcagaaaggcagtgtgggcaacttgctgggcttcctggaggatagtctggccgcc
acacagcttcaacagagccagagctctctactacacctacaggggatgcacttcgagccc
acaagcccggacatgatgcggcgagctgcccgggctctgcacgccttagccaaggtggag
gagaaccactcagagttcacactacatgagtcccgactcctcgacctttcagtgtctccc
ctaatgaactcgctggtttctcatgttatctgtgatgtactctttttgatcggccagtca
tga
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integrated database retrieval system
