Lates calcarifer (barramundi perch): 108889797
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Entry
108889797 CDS
T04895
Name
(RefSeq) retinoblastoma-binding protein 5 isoform X1
KO
K14961
COMPASS component SWD1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108889797
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
108889797
COMPASS/SET1 complex (yeast)
108889797
MLL-HCF complex
108889797
MLL3/MLL4 complex
108889797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
Beta-prop_EML
ANAPC4_WD40
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_LRRK2
Beta-prop_WDR75_1st
Beta-prop_NUP159_NUP214
WDR54
Beta-prop_SCAP
Beta-prop_WDR11_1st
Beta-prop_TEP1_C
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
108889797
NCBI-ProteinID:
XP_018541944
UniProt:
A0A4W6C6R7
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All DBs
Position
LG12:4662771..4671193
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AA seq
561 aa
AA seq
DB search
MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAK
IISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLTGDCDQRFRFPSPILKLQYHPRDM
DKVLVCPMKSAPVLLTLSDSKHVVLPVDDDSDLNVVAAFDRRGEYIYTGNAKGKILVLNT
NTQELVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE
PMQKLQDLVNRTPWKRCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLD
VAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKS
EPEQTGADAAEDEEVDVTTVDPIVAFCSSDEELEDYKALLYLPIAPEVEDPEENPFGPPP
DASVQASGPEDALAGGDKKQRQPSSEGGPAKKKARTTTIELQGVPSDEVHPLLGVKGDGK
SKKKTAGRPKGSKGKDKDFPFRPKPYRGERPSFPVEALGSSGPGVGGGGGGGGMKGRAEG
GLATGSLVSQTYKQHDIGGMD
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagaactgctcgaatcgtttgggcagaactatccagaggaggcagatggcact
ctggattgtatcagcatggccctcacctgcaccttcaaccgctggggcaccctgctggct
gtgggctgcaacgacggccgcattgtcatctgggactttctcacaaggggcatcgccaaa
atcatcagtgcacacatccacccagtctgctctttatgctggagtcgagatggtcacaag
ctggtgagtgcctccacagacaacattgtctcgcagtgggacgtcctgactggagactgt
gatcagagatttcgtttcccctcgccgatcctgaaactgcagtaccaccccagagacatg
gacaaggtgctggtgtgtcccatgaagtcagccccagtcctgctgactctgtcagactcc
aaacatgtcgtcctgcctgtggacgacgactcagacctgaatgtggtggcagccttcgac
agacggggcgagtacatctacactggcaacgccaaaggaaagatcttggtgttgaataca
aacactcaagagctcgtggcgtccttcagagtgaccactggcaccagcaacaccactgcc
atcaaatccatcgaatttgcacgcaagggcagttgcttcctcataaacacagcagaccgg
atcatcagagtgtatgacggcagggagatactcacctgtgggcgagacggtgaacctgag
cccatgcagaaattacaggacctggtcaacagaactccatggaagcgctgctgtttctct
ggggatggcgagtacatcgtggccggttcagccaggcagcacgccctctacatctgggag
aagagcatcggcaacctggtgaagatcctgcatggaaccagaggagagctgctgctggat
gttgcttggcatcctgttcgtccgataatcgcctccatctccagtggagtggtgtcaatc
tgggctcagaaccaagtggaaaactggagtgcctttgctccagacttcaaagaactggat
gagaacgtggagtacgaggagcgagagtctgagtttgacatcgaggacgaagacaagagt
gaacctgagcagacaggtgcagacgctgcagaggatgaagaggtggacgtcaccaccgtt
gaccccatagttgctttttgcagcagtgatgaggagctggaggactataaggccctgctg
tacctgcccatcgcccctgaagttgaggatccagaggagaacccattcggtcccccgccg
gacgcctcggtccaggcttccggcccagaggatgcattggctggcggtgacaagaaacag
cggcagccttcatctgagggaggcccagccaaaaagaaagcccgcactaccaccatcgaa
ctgcagggggtgcccagtgatgaggtgcaccccctactgggtgtgaagggggatggcaag
tccaagaagaagacagcaggtcggcccaaaggctccaaaggtaaagacaaagacttcccc
ttcaggcccaagccttacaggggcgaacggccctccttccctgtggaagccttgggcagc
tctggcccgggagttggaggaggaggaggaggaggagggatgaagggcagggcagagggg
ggcctggccacagggagtctggtctcacagacgtacaaacagcacgacattggagggatg
gactga
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